Carettochelys insculpta (pitted-shelled turtle): 142019287
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Entry
142019287 CDS
T11194
Symbol
COL7A1
Name
(RefSeq) collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
142019287 (COL7A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
fn3
Kunitz_BPTI
VWA_2
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
DUF4992
DUF1194
Motif
Other DBs
NCBI-GeneID:
142019287
NCBI-ProteinID:
XP_074862044
LinkDB
All DBs
Position
11:26159114..26269620
Genome browser
AA seq
3306 aa
AA seq
DB search
MDPPQCTAGRGRCCSLGRDAALICHGAAAAVLSGLRMATLPGDLSWVLTGAEEALEFLLP
VRRALPARSLPGSLALAPFALQSQTGPQEQLRQTTPPVHGSTRPAEVAQGQGSRLGEESF
PDRFVDMMDSSGLRLPLRSCLGGPSRVAWRQTEGRPGTAAAGPILPRGPDMALAPPRPRP
WCSGCLASRWAAGALLATCVLTLCCTGSSSHRSAWRTREPVAQGGSPQELVAQAVPGREL
RTAAAQGSSRFGKPRAFPEALPHSKLASTGGKPLLLQGLLQAERAGTRPGSALIVEVLGD
CSPHRASLHPRDRGTRCTGHCSRMAGGPSIAAQRPALPLEHCLHRVALQPANRHPHPRSA
RSQRGLRAETRDRLALSCALGQREPAWFQRGQSSASGGHCRTSPLPPRSLSAEQLLGLEH
VSKQGQGAQVKVTLQRGARLLGVGPLVGAIQDGGCYHEKVGAASGCAAGSGSSYGAKKKP
RAKRASPAADGYVAGVCINVYAADIVFLVDGSSSIGRANFRLIRAFMEDLVRPFVHVVGE
KAVRFGAVQYSDDPRVEFLFSQHPNGTEVKRAVQQLSYKGGNTRTGAGLRYIADNFFGPA
QIRPGVPQVCILITDGKSQDDTKQPSMKLKAQGTKVFAVGIKNADRAELMSVASTPTEDY
FFYVNDFKILSTLLPLVSRRVCASAGGVLQTGSQVYSGPSSLVFVEHAVDALSIRWTAAG
GPVTGYKVQYVPLTSLGQQVTAEMQEVSLSPGATSTVLRQLRAGTDYLVTVTAQYANSIG
ESVSGKGRTEAPSGVLNFRVVEAGPSFLRLAWGAALENLQGYRITYLARGEAQAEELSLG
ANAVSVTLSSLRPSTDYVVTLQPISQGRVAAPAQLTGRTLRSEGVQQLSVQNVSQQSMVV
TWQGVSGATGYRVFWGLPSGAEPPQTASLPTNINTYQITGLQPGTSYRITLYTLYDGREA
VSPGTISQTEPGSVGSVTSLRVAEIRPKQLSVTWNGLPGATGYKLTWRASDGRELSRVLP
TDRTSFTIEGLQAGAVYVVGVSALIGDREGSPVTVPARTAPERVGMVSSLRVLSSRSNVV
RVSWVGVPGATAYRVAWSRHDGGTESSKLVSGDTSSFDIPSLEGGVSYTVQVTALIDSRE
GDPVSIVVTTPQGPPVLPVGNLQVRDSSEQRIRLTWSPVPGSTGYRLSWRPADGGPDRSQ
LLAPSVNAYDIEGLEAGGRYEIRITSLVGSRESEAVGITASTVPLGQVTDFRVTETREDA
VSLAWTPAPGASGYLLTWQLPQEGGEMQRTLPGSATSHWVSGLRLGHRYLFTIQPLFGSS
RGAAASLTTRTVCRDARGDIIFLVHGTRDSAYSAEAVRALLSSTVSRLGRLGPDATQVGL
VIYSYRSLPWLLLNHSSDLSTVLERIRSMSYQEPSGNALGAAISFARSYMLSPGAGHRPG
VPGVLVVLADSPSGDDVLGPAREAKAAGIQVLAVGMDGADREQLRRVVTGEDPRVLFYAE
DSSAGLAKLEDGLSSALCRVTVWDQPDPCTVQCSKGEKGEAGQPGQKGSVGQPGPPGQPG
LNGLPGPPGPMGPRGAPGEIERPGEKGDRGFPGVDGIPGSPGRPGNPGSPGQPGGRGLPG
LRGAPGEQGPVGPPGLRGEKGEPGEPGAIVNGGGRLPGRKGEPGSPGSPWNPELPALGAL
APLHRVPREPFRLPREVLGCPGTLGLEELSGTRDLLGPSDLQGHQDQPESLSRGRKASEG
SGACPATLGPGDQLGPQARKETRVKGKKVFQGHRVAQGTQEIGAPEDLQGERGQPGELGA
TGEKGERGSPGPEGPKGELGAPGRMGPAGREGDRGAPGEPGKPASSIAGIKGEKGDRGLA
GAEGAPGPRGDAGDKGDRGPPGFSVPGPPGPKGEQGDRGTAGLAGKNGPKGDPGEPGEKG
ETGRPGAPGQMGLRGKEGEHGEKGNEGPPGEPGQPGKSGERGPRGQPGTRGLPGEKGDQG
DPGEDGRNGSPGVPGAKGDRGEPGPAGPPGRTVDSGAGGGIGERGEKGEPGDPGEDGMKG
AKGEAGLPGPPGERGIEGPRGPPGVRGDPGDRGPAGEKGDRGPAGLDGRNGQDGKPGQMG
PAGQRGDPGKQGDPGRDGLPGPRGEPGPPGAVGPPGPPGLTGKPGDDGKPGLNGRNGEDG
TPGEDGKKGDKGEAGAPGRDGREGPKGERGDRGAPGAGGPPGVPGLPGQVGPPGQGVPGL
PGAAGQKGDRGEPGSKGEQGRPGDPGQRGEPGTVSNVERALEVYGIKMATLREITGAYDG
SADTFLPYPDRRRGLKGDRGDPGDRGPPGKEGVMGFPGERGPKGDKGDQGPAGPQGPVGR
AIGEQGPQGPPGQAGEPGKPGIPGMPGRAGELGEAGRPGEKGDRGEKGDRGEPGRDGVQG
PPGPPGPKVHVAEGILPGPPGERGPTGPRGAKGEPGGDGERGPKGDKGEAGQKGEQGEAG
AKGRDGSPGLPGERGLAGPEGKPGMPGFPGVLGRPGNQGDPGPPGPAGLAGPPGAQGPSG
IKGDPGEPGSSIRGLPGPQGSIGLPGPPGPPGLVGPQGPPGVPGQVGETGKPGVPGRDGV
PGKEGEPGLPGKMGVPGPSGPAGPKGEPGDAGLPGQAIVGPPGMKGEKGAPGGMDGKLLG
EPGAKGERGLPGPRGEKGEPGRQGEPGDPGEDGAKGAPGIKGEKGSLGIGLQGPPGKDGP
PGLKGDPGLPGLPGPPGLPGVAGTPGQPGLRAENGQPGPPGPPGERGLIGFPGRDGSSGL
PGPPGPPGPAGAQGIPGPKGDKGDVRVGQPGPRGERGDTGPRGEDGRPGLEGDRGPAGPP
GNRGERGDKGDIGAMGPKGDKGDTVIVEGPAGVRGSKGEPGDRGLKGMEGEKGDKGDPGF
PGEKGGKGEQGEKGSTGFPGARGPSGQKGEVGESGDPGESGLPGKDGIPGAKGDKGAVGP
FGIRGPKGDRGPKGACGQDGDRGEKGEPGIPGRMGLPGRKGEPGELGMPGTPGLPGKEGL
MGPKGDRGFNGQQGAQGDQGEKGDRGAPGIMGAPGPRGNDGAPGSPGPPGSIGPKGPEGV
QGQKGERGPPGESTVGARGVPGIPGERGDQGSPGPEGLRGEKGDPGMTEQEIRAFVRQEM
SQHCACGGEFSSEPRGWGTHARNRLKSSRRGGRNARGNQDHGRTGLLPNYPSTLPFPSAN
TDLVPVLKLSHAEEEGGHEVHDPEYEHVYAMEDYEAGLEADGTESSMPSDADPCSLPLDE
GDCNRFTLRWYYNQKVEECRPFIYSGCRGNLNRFYTKEDCDLQCRHQADADVQTAADNTS
AGKTNV
NT seq
9921 nt
NT seq
+upstream
nt +downstream
nt
atggatccccctcagtgcacagcaggccgcggccgctgctgctccctcgggcgggatgct
gctctaatctgccacggggcagccgcagcggtgctgtcgggcctccgcatggccacgtta
ccgggggacttgtcgtgggtgctgactggcgcagaggaagccctcgagtttctgctccct
gtgcgcagggccctgccggcacggagcctgcctggaagccttgctctagctccattcgcc
ctgcagagccagacggggccccaggaacagctgcggcaaacaacgccgcccgtgcacggc
agcactcgtcccgccgaggtagcacagggccaggggagccggctgggggaggagagcttt
cctgaccgctttgttgatatgatggattcctctgggctgcgcctcccgctgcgcagctgc
ctgggtggtccctcgcgggtcgcttggcgccagacggaggggcggcctggcacagctgca
gcagggcccatcctgcccagggggccagacatggcactggcacccccccgcccccggccc
tggtgctcgggctgcctcgcctcccggtgggccgcaggagccctcctcgccacctgcgtg
ctcacgctctgctgcactgggagcagctcccaccgctcagcctggcgtacaagggagcca
gttgcccagggaggctctccgcaggagctggtggcgcaggcagttcctggcagggagctc
aggactgcggctgcccaagggagcagccggttcgggaagcccagggcttttccagaggcg
ctgccccattccaagctggcatccactggcgggaagccgctgctcctgcagggcctgctc
caagcagagcgagcgggcacccggccaggcagcgccctgattgtggaggtgctaggggac
tgttctccccacagagcatccctgcaccccagagacagaggcactcgctgcacaggccac
tgctcacgcatggctggggggcccagcatcgctgctcagaggccagcactgccgctggag
cactgtctgcacagggtcgcacttcagcctgccaaccggcacccccacccccggtcggcc
cgcagccagcggggcctgcgcgcagaaacacgagaccggctcgcgctctcctgcgctctg
gggcagagggaacctgcttggttccagcgagggcagagctcagccagcggcgggcactgc
agaacgtccccactgccccccaggagcctctctgcagagcagctcctgggcctggagcac
gtctccaagcagggccagggggcacaggtaaaggtgacgctgcagagaggcgctcggctg
ctgggcgtgggccctctcgttggggccatccaggacggaggctgctaccatgagaaggtg
ggtgctgcttctggctgtgctgctggctccggctccagttatggcgcaaaaaagaagcca
agagccaagagagccagccctgctgctgatggttacgttgcaggggtgtgtatcaatgtc
tatgcggccgacatcgtgttcctggtggacgggtcctccagcatcgggagggccaacttc
cggctgattcgagccttcatggaggacctggtccggcccttcgttcacgtggtgggcgag
aaggcggtgcgcttcggggcagtgcagtacagtgacgaccccagggtcgagttcctgttc
tcccagcaccccaacgggacggaggtgaagcgagccgtccagcagctcagctacaagggc
gggaacacgcgcacaggcgccggcctgcggtacatcgctgacaacttctttgggcccgct
cagatccggcccggggtcccacaggtctgcatcctcatcaccgacggcaagtctcaggat
gacaccaagcagccatccatgaagctgaaggctcagggcaccaaggtctttgctgtgggg
atcaagaacgcagaccgcgccgagctcatgagtgtggcctccacgcccacggaggactac
ttcttctatgtcaatgacttcaagatcctgagcaccctgctgccgctggtgtctcggcgg
gtgtgcgccagcgccggaggggtcctgcagacgggctcacaggtgtacagcggcccctcc
agcctggtctttgtggagcacgcggtggacgccctgagcatccgctggaccgcggcgggc
ggccccgtcacaggctataaagtccagtacgtgccgctcaccagcctggggcagcaagtg
acagcagagatgcaagaggtctcactgagccctggggcgacgagcacggtgctgcgccag
ctgcgggcagggacggattacctggtcactgtcaccgcccagtacgccaacagcatcggc
gagtcggtctctggcaaagggcgcactgaggccccctcaggagtgttgaatttccgagtg
gtggaggctgggccatccttcctcaggctggcctggggagctgccttggagaacctgcag
ggctaccggatcacctacctggcccgaggtgaggctcaggcagaggagctgagcctgggg
gccaacgcggtgtccgtcacgctcagcagcctgcgccccagcactgactacgtggtcacc
cttcagcccatctcccaggggcgagtggcagcgccggctcagctcaccggccgaaccctg
cgttcggaaggggtgcagcagctgtctgttcagaatgtctcccagcagagcatggtggtg
acctggcagggtgtgagtggcgctactggataccgggtcttctgggggcttccctccggt
gcagagccccctcagactgcgtccctgcctaccaacatcaacacctaccagatcacaggc
ctgcagccgggcacgagttatcgcatcaccctctacacgctgtacgacgggagggaggcg
gtctcccccggaaccatctcgcagacggaacccgggtctgtgggcagcgtcaccagcctg
cgggtggccgagatcagacccaagcagctgagtgtcacctggaatgggcttcctggggcg
actggctacaagctgacgtggcgggcaagcgatggtcgggagctctcccgggtcctgcca
accgacaggacctccttcaccattgaggggctgcaggctggggccgtctatgtcgtgggg
gtctcggctctcattggcgacagggaaggcagccctgtcactgtccctgccagaacagct
cccgagcgggtggggatggtctccagcctcagggtcctctcgtccaggagcaacgtcgtc
cgggtcagctgggtcggcgtgcctggggcgacagcttacagggtggcgtggagccggcac
gatgggggcaccgagtccagcaagttggtttctggtgacacgagctcctttgacatcccc
agcctggagggtggggtcagctacaccgtgcaggtcacagcactgatcgacagccgcgag
ggtgaccctgtctccatcgtcgtcaccacgccgcaggggccccccgtccttcccgtgggg
aacctgcaggtgcgagactcctcggagcagcgcattcgcctcacctggagcccggtgccg
ggcagcactgggtaccgcctgagctggaggccggcagatggcgggccggacaggagccag
ctgctcgcccccagcgtgaacgcctacgacattgagggcctggaggcgggcgggcgctac
gagatccggatcaccagcctggtgggcagccgggagagcgaggctgtgggcatcactgcc
agcactgtgcctctcggccaagtcactgacttccgggtgacggagacgcgggaggatgca
gtgagcctggcctggactccggctcctggggccagcggctacctcctcacctggcagctg
ccccaagagggaggcgagatgcagaggacactgccggggtcggccacttcccactgggtg
tcggggctgcggctggggcacagatacctcttcaccatccagccactgttcgggagcagc
aggggcgcggcggcgtccctcaccacccgcacagtttgcagggacgctcgcggtgacatc
atcttcctggtgcatggcacccgagacagcgcctacagcgccgaggccgtccgtgccctg
ctctccagcaccgtctccaggctgggccggctgggccccgatgccacgcaggtgggcctg
gtgatctacagctaccgcagcctcccatggctcctgctgaatcactccagtgacctgagc
actgtgctggagcggatccgcagcatgagttaccaggagcccagcggcaacgctctggga
gctgccatcagctttgccaggagctacatgctgagccccggggcagggcaccggcctggt
gtgccgggggtgctggtggtgctggcagacagcccctccggcgacgatgtccttgggcca
gccagggaggccaaggcggcagggatccaggtgctggcggtgggcatggacggggcggat
cgcgagcagctgcgccgtgttgtcaccggagaagacccccgcgtgctgttctacgctgag
gactcgagtgctggcctggccaagctggaggacgggctgtccagcgccctctgccgggtg
actgtctgggaccagccagacccctgcacggtgcagtgctccaagggtgagaagggggag
gccggccagcctgggcagaaaggaagcgtggggcagcctggcccccctgggcaaccgggg
ctcaacgggctcccgggcccccctggaccaatgggaccacggggtgcccctggtgagatc
gagcggcccggcgagaagggggaccggggattccccggagtggatgggatcccaggaagc
cctggtcgccctggcaaccctggctcccctggccagccgggcggacgaggccttcccggc
ctccgaggggccccgggggagcagggcccagtggggcctcctgggctgcggggagagaaa
ggcgagccgggcgagccaggagcgattgtgaatggaggaggacggctgcctggacggaaa
ggggagcctgggagtccgggctcaccctggaatccagagctcccggcccttggtgccctg
gctcccctgcacagagtaccaagggagcctttccgactccctagggaagtcctgggctgc
ccgggaaccctgggcttagaggagctgtcggggacccgggacctcttgggcccatcggac
ctccagggccaccaggaccagccggagagtttgtcaagggggcgaaaggcgagcgagggg
agcggggcttgcccggcgaccctgggccccggggaccagctgggcccccaggccagaaag
gagacaagggtgaaggggaagaaggttttccagggccaccgggtcgcccaggggacccag
gagatcggggccccagaggacctccagggtgagcgtgggcagccgggagagctcggcgcc
accggggagaagggcgagcgtggctctcctgggccggaagggccgaagggggagctggga
gcccccggccgcatgggcccagccggcagagagggggatcgaggtgctcctggggaacct
ggaaagccggcttccagcatcgccggaatcaaaggagagaagggtgacagaggccttgca
ggagcagagggggccccaggcccccggggagatgcaggagacaaaggagaccgcggcccc
cccggattcagtgtccctggcccacctggccccaaaggagaacagggcgacagggggact
gctggcctcgctggcaagaatggcccgaagggagaccctggggagcctggggagaaggga
gagacggggagaccaggagctccagggcagatgggcctgcgagggaaggagggtgaacat
ggtgagaaagggaacgaggggcccccgggagagccgggtcagcctggcaaatctggagag
aggggcccccggggccaaccaggaacccgtggcctccctggggagaagggtgaccaggga
gacccaggcgaagatggcagaaacggcagcccaggagtgccaggggccaagggcgaccgt
ggggaaccggggccggccggacccccaggacgaactgttgattcgggagcaggaggagga
ataggcgagagaggcgagaagggggagccaggggatcccggcgaggatgggatgaagggt
gcaaagggcgaggccgggttacctggaccgcctggagagagggggatcgaaggccccaga
ggcccccctggagtgcggggggaccctggagaccgaggcccagcaggagagaagggagac
cgaggcccagcggggctggacggccggaatgggcaggacggcaaacctgggcaaatgggc
cctgcaggacaaaggggtgacccaggcaagcagggtgaccctggccgagatggtctgccc
ggccctcgaggggagccagggccccccggagctgttggccccccaggaccaccaggcttg
actggcaaacccggagacgacgggaaacccggcctgaatggcaggaatggagaagatggg
accccaggagaagatgggaagaagggggacaaaggagaggctggagcccctggcagagat
ggtcgagaaggccccaagggtgagcgaggggatcgtggggcgccaggtgccgggggacct
cctggtgtccctggtctgcctgggcaggttggccccccaggacagggggttccaggtctc
cccggggctgctggacaaaagggcgaccgaggagagccaggatctaaaggagaacagggc
agacctggcgatcctggacagcgaggtgaacccgggacggtctcgaatgtcgaacgtgcc
ctggaagtctacgggattaagatggccactctcagagagatcactggtgcctatgatgga
agtgcagatacattcctgccctaccctgatcgccggagaggcctgaagggtgacaggggg
gacccaggcgacaggggacctccaggcaaagagggcgtgatgggcttccctggagagaga
gggcccaaaggtgacaaaggagaccaagggcctgcaggcccccagggcccggtgggacgt
gctatcggagagcaggggccgcaggggccgcctggccaggcaggggaacccggcaagcct
ggaattcctggcatgccgggccgggctggggagctcggtgaggctggcaggcctggtgag
aagggggatcggggtgagaagggcgaccggggagagccgggcagagatggcgtgcagggt
cctccagggcccccagggcccaaggtgcatgtggcggaagggatccttccggggcctcca
ggggagcgtggacccacaggacccaggggagccaagggagagcctggcggggatggcgag
agaggacccaaaggagataagggtgaagctgggcagaagggggagcaaggagaagctggt
gcaaaagggagagacggcagcccgggcctcccaggagaaagaggccttgctgggccagag
gggaaaccgggtatgccaggcttccctggagtgctaggccgaccgggcaaccagggagat
ccagggccgccaggcccagctgggcttgctgggccaccgggcgctcagggcccatcagga
ataaagggagacccgggtgagcctggctccagcattcggggtttgcctgggccccagggg
agcatcggcctcccgggccccccgggcccccctggccttgtgggaccacagggcccccct
ggagtgccaggacaagtgggggagacgggaaagcctggtgtgccgggaagagatggagtg
ccagggaaggagggagaaccggggctgcctgggaaaatgggtgtgccaggaccctcaggc
cctgctggacccaaaggagagccaggcgacgctgggctcccaggacaggccattgtgggc
cctccggggatgaaaggcgagaagggcgcccctggagggatggatgggaagctgctgggg
gaaccgggtgccaagggcgagcgaggcttaccaggcccccggggagagaagggggagcct
ggaagacaaggggagcccggagaccctggggaagatggagccaaaggagcccctggaatc
aaaggagaaaagggttcacttggaattggcctgcagggacccccgggaaaagatgggcct
ccaggtttgaagggtgaccctggcttacctggcttaccaggacctccgggcttgccaggt
gttgcagggacccccggccagccgggtctgagggcagagaatggccagccaggcccacca
ggacctccgggtgagaggggtttgattggcttccctggaagagatggcagttccggatta
ccggggccgccggggcccccagggccagcaggggcacaaggcattccaggaccgaagggt
gacaagggggatgtgcgggttggacagccgggccccagaggtgaacgaggagacacgggg
cctcggggagaagatggccgcccgggactggagggagatcgtgggcctgcggggcctccc
gggaaccgcggggagcgaggtgacaagggagacattggcgctatggggcccaaaggagac
aagggtgataccgtcattgtagaggggccagctggagtccgggggagcaagggggagccg
ggagaccgtggcctgaaggggatggaaggggagaaaggcgacaagggggacccaggcttc
ccaggagagaagggaggaaagggcgagcaaggggagaagggctccacaggcttcccagga
gcacgtggccccagcgggcagaagggtgaagttggcgaatcgggagaccccggagagtcg
ggcctgccagggaaggatggaatcccaggagccaaaggggataaaggggccgtggggccg
tttggaatacgagggcctaagggggatcggggaccgaaaggcgcctgtggccaggacgga
gataggggggagaagggagagccggggattccaggccgcatgggacttccaggaaggaag
ggtgagccgggagagctgggcatgcctggaacgccaggactccccgggaaagaagggctc
atgggacccaagggtgacagggggtttaatggtcagcagggcgcccagggagaccaggga
gagaaaggagaccggggagccccaggcattatgggcgccccaggccctaggggcaatgat
ggagcacctggctcacccggcccaccaggcagcattggccctaaggggcctgagggggtg
caagggcagaagggtgaaagaggtcccccaggagagtcgactgtaggggcccgaggtgtc
cctgggattccaggagagagaggagatcaggggagtccaggacccgaaggcttgagagga
gagaagggggaccctggcatgacggaacaagagatccgggcttttgtcagacaggagatg
agtcagcattgcgcttgcggaggggagttctcttccgaaccacgaggatgggggacacat
gcaaggaacagacttaaatcttccaggagaggaggaagaaatgccagaggaaatcaggat
cacggcagaacaggtcttctccccaactatccatccaccctgccattcccatctgccaac
actgatctagtccccgtgcttaagttgtcacatgctgaagaagagggcgggcatgaggtt
catgaccctgagtatgagcacgtctacgccatggaggactacgaagcgggcctggaagct
gatgggacagagagcagcatgccaagcgatgccgacccgtgcagcttgcccctagacgag
ggagattgcaacagattcacactcaggtggtactataaccaaaaagttgaagagtgccgg
cctttcatctacagcggctgcagggggaacctcaaccgtttctacaccaaggaggactgt
gatctccaatgcaggcaccaggcagatgcagatgtccaaactgctgctgacaacacatca
gctgggaagacgaatgtgtaa
DBGET
integrated database retrieval system
