Carettochelys insculpta (pitted-shelled turtle): 142019369
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Entry
142019369 CDS
T11194
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03008
Ribosome biogenesis in eukaryotes
ciz03013
Nucleocytoplasmic transport
ciz03015
mRNA surveillance pathway
ciz05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142019369 (NXF1)
03015 mRNA surveillance pathway
142019369 (NXF1)
03008 Ribosome biogenesis in eukaryotes
142019369 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
142019369 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142019369 (NXF1)
03009 Ribosome biogenesis [BR:
ciz03009
]
142019369 (NXF1)
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
142019369 (NXF1)
mRNA cycle factors
Stress granule specific factors
142019369 (NXF1)
Ribosome biogenesis [BR:
ciz03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
142019369 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_4
LRR_8
Motif
Other DBs
NCBI-GeneID:
142019369
NCBI-ProteinID:
XP_074862280
LinkDB
All DBs
Position
11:16705594..16717021
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AA seq
633 aa
AA seq
DB search
MAEEGKGGYSEHDDRVGGAGGSGGFPARRRKGRVPFRGKMYSDVSHRAWSRSGAGHSPSG
QLEEGDGDVPMSDAHDSPRTRYSPYGSRLNRRGDDWHSRGRGGATNIQVTVKRELNLQER
EESTARENVRRRWYKVTIPYGKKYDKSWLVSSLQEVCRVPFTPVEFHYDQSRACFYVEDM
MIANALKQVSRKLVDRDNYKVVLIVHHSSPPLSVRKELKPEEIEQLKLTMSKRYDGSQQA
LDLKNLRTDPDLVAQNVDMVLNRRNCMTAVLQIIKDNIPELLSLNLSGNKLYQLDDLAEL
PHKATNLKILNLSRNELKSERELDKVKGLKLEELWLDGNYLCNNFRDQSSYVSAVRQRFP
KLLRLDGHELPPPIVFDVEAPTTLPPCKGSYYGSDDLKALVMRFLQQYYSVYDSGDRQGL
LDAYHDGACCSLSIPFLPQNPARSILSEYFKGSRNVKKLKDPTLRFKLLKHTRLNVVAFL
NELPKTQHDINSFVVDVCAHTNTLLCFAVHGVFKEVEGKSRDLVRAFTRMFIAVPAGITG
LCIVNDQLFVRKANTEEIRKAFVMPAPTPSSSPVPTLSAEQQEMLHAFAMQSGMNIEWSQ
KCLQDNDWDYSQAAQVFTQLKTEGKIPEVAFLK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggaagggaaaggggggtacagcgagcatgatgaccgcgtgggtggcgcaggt
gggagcggggggttccccgcgaggaggaggaaaggccgagtccccttccgaggcaagatg
tacagcgacgtgagccaccgcgcgtggagccgaagcggagcaggtcacagcccttcgggt
cagctggaggagggcgatggagatgtccccatgagcgatgcccatgacagccctcgaacc
agatattctccctatgggtcgcggctgaacagacgaggagatgactggcacagccggggc
cggggaggtgccacgaacatccaggtcacggtgaagcgagagcttaacctccaggaacgg
gaggaaagcacagctcgcgaaaatgtccggaggagatggtacaaggtcacaattccttat
ggaaagaagtatgacaagtcgtggcttgtgagctccctccaggaggtgtgccgtgtcccc
tttactccagtggagttccactacgaccaaagccgggcctgcttctacgttgaggatatg
atgatagccaatgcactcaagcaggtgtcacgcaagctcgtagatcgagacaactacaag
gtggtgctaattgtccaccactcatccccacccctgagtgtcaggaaggagctgaagccg
gaagagattgagcagctgaagctcactatgagtaagagatatgatggctctcagcaggcc
ctggacctgaagaaccttcgcacagacccagacctggtggcacagaacgttgacatggtg
ctgaaccgacggaactgcatgacggccgtgctgcagatcattaaagataacatcccagag
ctgctctccctgaatctcagtggcaataagctgtaccaactggatgacctggcggagctt
ccccacaaagccaccaatctcaagatcctcaacctgtcccgcaatgagctgaagtctgag
cgggagctggacaaggtgaaggggctcaagctggaggaattgtggttggatggaaactat
ctgtgcaacaatttccgagaccagtcctcttatgtcagcgccgtccgccagcggttcccg
aagcttctgcgcctggacggccacgagctccccccgcccattgtgtttgacgtggaagcg
cccaccaccctccctccctgcaagggcagctactatggctcagatgacctgaaggcactg
gtgatgcgcttcctgcagcagtattactctgtgtacgactctggtgacaggcagggactg
ctggatgcctaccacgatggggcctgctgttccctcagcatcccttttctcccccagaac
cccgccagaagtatcctgagtgaatacttcaaaggcagcaggaacgtaaagaaactcaag
gaccccactctgcgcttcaaactgctcaagcacacaaggctgaatgtggtggccttcctg
aacgaactgcccaagacccagcatgacattaactcctttgtggtggacgtctgcgcacat
acgaatacgctgctgtgctttgctgtccatggggttttcaaggaagtggagggcaagtcc
cgggatttggttagagccttcacccgcatgttcattgctgtgccagctggcatcacaggg
ctgtgcatcgtgaatgaccagctgtttgtgcgcaaagcaaacacggaggagatccgcaag
gccttcgtgatgccggcccccacaccttcgtccagccccgtgcccacgctgtcggccgag
cagcaggagatgctacatgcctttgccatgcagtctggcatgaacattgaatggtcccaa
aagtgcctccaggacaacgactgggactacagccaagcagcccaggttttcacccagctc
aagacagaggggaagatcccagaggtggcgtttctcaagtga
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