Carettochelys insculpta (pitted-shelled turtle): 142020356
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Entry
142020356 CDS
T11194
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz04382
Cornified envelope formation
ciz04510
Focal adhesion
ciz04512
ECM-receptor interaction
ciz04518
Integrin signaling
ciz04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
142020356 (COL4A6)
04518 Integrin signaling
142020356 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
142020356 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
142020356 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
142020356 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ciz04147
]
142020356 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
ciz00536
]
142020356 (COL4A6)
Exosome [BR:
ciz04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
142020356 (COL4A6)
Glycosaminoglycan binding proteins [BR:
ciz00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
142020356 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
142020356
NCBI-ProteinID:
XP_074864203
LinkDB
All DBs
Position
13:complement(18086785..18331461)
Genome browser
AA seq
1724 aa
AA seq
DB search
MRAGVGVLVALCLAVEMVTGGGKKSYNGSCGGRDCSTSCKCFPEKGARGRPGPIGNQGPI
GAPGFTGPQGLPGAKGERGAVGYPGSAGQKGDKGPMGVPGFQGINGIPGHPGQPGPRGLP
GIDGCNGSIGSPGISGLDGFPGVPGPPGRFGPKGPKGEPTYAEGGLKGSKGEIGLPGLDG
ISGLQGFPGPAGSAGPIGLPGLQGPTGELGPQGPKGNMGLGFQGEKGEKGDVGLPGPPGP
PPSTGVLEFMGFPKGKPGAKGEPGLKGFPGTAGSPGPPGSGGIGEKGEKGVPGLPGGRGL
MGSDGPDGIPGRKGQVGLAGFPGLDGMQGMKGELGEMGPPGPLTSIDQEEGLVSGERGDP
GNPGPPGPRGDDGTAGLPGYPGPPGFSALVPVKDMYGLMPRKSMDISLCVYCSRGFPGIP
GITGEPGDRGRTTIGLPGAPGLDGLPGMPGPPGLPGPSRPVFPSEALLEGEPGEPGIPGQ
QGPPGVLGLKGTKGDPGDCACDGGVTQAGPRGAPGPQGQPGNPGELGRKGSRGDPGTVGA
QGPRGPPALHGQPGSPGLKGEKGEPSFARGKGPRGDPGATGVRGPSGIPGIPGRNGFPGL
RGLPGPPGDGGLGFPGEKGLPGLPGSKGRHGESGFPGGGFPGPSGIRGPPGDPGVDGFPG
QPGLPGPPGDCCCGVEVGKGDLDTEGGITLPCIVSGAFGAPGPPGIPGFPGPKGSRGIPG
SPGQPGLRGSKGQPGTPGAIGVTGAPGFSGPRGDQGSQGLPGLDGTDGFPGKMGAPGLPG
AKGAPGDMFGAERGALGEPGTPGFPGDKGLAGEPGFPGQKGVDGRPGLPGFKGEQGNPGF
PGIAGLRGPPGPGGPFGIKGEPGPRGASGFSGSPGFPGAKGLTGDAGPPGPAGMKGFPGL
EGFPGPPGERGFPGPLGPVGRDGLPGFSRAKGEKGPPGLIGFPGMPGVPGAPAMSGLKGI
PGASGREGNVGYPGPPGQKGDRGDLGPPGLPIVRPAELVFKGDKGGPGSVGLSGFPGPRG
GKGFLGNRGQPGLPGPRGPLGKDGGQPGDAGFPGLPGPPGFPGQKGLPGIKGLPGFPGES
GSEGISGAPGFPGTAGFPGPKGDPGESLGILGRMGNKGERGDRGFPGERGRYGPKGEPGF
PGTIGIDGSKGIPGDLGREGPPGRPGIAGLRGNAGPPGSPGQLGPVGFVGLPGISGPKGF
PGFPGLNGLNGLPGTKGSPGTPGLSEAGLNGPAGFPGPKGEEGSPGIGLGNPGLPGLKGS
PGDMGLPGTSGLRGLPGPPGLSLPSNIPGRRGDPGPPGVNGNPGPPGPPGPPGPSGPASN
QGDSGVPGFPGAPGLPGVKGDMGLPGPVGIPGASGLKGVKGEPGFMGLPGKDGLPGDPGI
PGLKGEPGRKGFPGLPGAPGLTPKPEPVRVLPGLPGLPGIDGVPGFIGDAGIRGPIGKQG
PKGLPARSGQKGRPGLPGPAGVVGDPGLPGFPGPQGLEGVSGKPGPFGLPGMPGRSIGVG
YTLVKHSQSEQIPPCPVGMNKLWEGYSLLYVEGQEKAHNQDLGFAGSCLPRFSTMPFIYC
NIYEVCYYASRNDKSYWLSTTAPIPMMPVSSLEIPQYISRCSVCEAPSQAIAVHSQDITI
PQCPEGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFA
NKYSFWLTTVERTQQFVSDPPSETLKAGQLRTRVSRCQVCMKNL
NT seq
5175 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgccggggtgggtgttctggttgctctctgcctagccgtggaaatggtgactggg
ggtgggaagaaatcctataacggatcgtgtgggggtcgagattgcagcacctcctgcaaa
tgttttccagagaaaggtgctcggggtcgtccgggacctattgggaatcaaggacctata
ggtgctccaggatttactgggccacaaggtttgccaggggcaaaaggtgagagaggagca
gtgggctatccaggatcagctggacaaaaaggagataagggcccaatgggggttcctgga
tttcaagggatcaatgggattccgggccaccctggccagccagggcccagaggtctccct
ggcattgacggctgcaatggttctattgggagtcctggcatttcagggttggatggattt
cctggtgtaccagggccacctggtcgctttggtcctaagggtcccaaaggagaacctacc
tatgctgaaggtggtcttaaaggaagtaagggtgaaattggtcttcctggattggatgga
atttctggtctacaaggtttccctggcccagcaggttctgcgggtcctatcggattgcca
ggtttgcaggggccaacgggtgaactggggccacaaggaccgaaaggtaacatgggctta
gggttccaaggagagaaaggtgaaaagggagatgtcgggctacctggccctccaggtccc
ccaccatccactggtgtactagagttcatggggtttccaaaagggaaaccaggagcaaag
ggtgagccaggcctgaaaggattccctgggactgcaggatcgccaggccctccaggctct
ggaggtattggagaaaaaggagaaaagggagtccctggcttaccaggtggcaggggatta
atgggatcagatggacctgatgggattccaggaagaaagggtcaggtgggtctcgctgga
tttcctgggctggatggaatgcaaggaatgaagggtgaattgggtgaaatgggtcctcca
ggccctcttacttctattgatcaagaagaaggacttgtctcaggtgagcgtggagatcct
gggaatccagggccaccaggccctcgaggagatgatgggactgctggtttaccaggctac
cctggtcctccaggtttctcagcacttgttccagtgaaagacatgtatggtctgatgccc
aggaagtcaatggacatatctctgtgtgtttactgtagcaggggatttccaggtattcca
ggcattactggtgaaccaggagaccgagggagaacaacaattggtttaccaggcgctcca
ggcctagatggtttaccgggtatgccaggacccccaggactgccaggtccatcacgccct
gtgtttccatctgaagcactccttgagggagaacctggggagccaggaatacctggacaa
cagggaccaccaggagttttgggactaaaagggactaaaggggatccaggtgattgtgct
tgtgatggaggagtcacacaagctggaccaagaggtgcaccaggccctcagggtcaacca
ggaaatcctggtgaacttgggcgtaagggttccaggggagatccaggcactgtgggtgca
caagggccacgtgggcctccagctttgcatggtcaaccaggatctccaggccttaaggga
gaaaagggggaaccatcctttgcaagaggtaaaggtccccggggagatcctggtgcaaca
ggagtcagagggccttctggcatcccaggaattcctggcagaaatggattcccaggttta
cgaggtctgccgggtcctccgggtgatggtggactaggctttccaggtgagaaaggccta
ccaggattacctggctccaagggccggcatggggagagcggttttcctggcggtggtttc
ccaggtcctagtggaattcgtggccctccaggtgacccaggagtggatggttttccagga
cagccaggtcttccaggtcctccaggtgactgctgctgcggtgtggaggttggtaaagga
gacttagacacagagggaggaatcaccttgccctgtatagtttctggagcatttggtgca
cccgggcctccaggcataccaggatttccaggtcccaagggcagccgtggcattccaggc
agtccaggccaacctggattacgtgggtcaaaagggcaaccaggtaccccaggagcaata
ggagtaaccggagcaccaggcttttctgggcctcgtggagatcagggctcacaagggctt
ccgggacttgatggaacagatggtttccctggaaagatgggcgctcctgggttaccaggg
gctaaaggagctcctggtgacatgtttggtgctgaaagaggagctctgggtgaacctggc
acacctggattcccaggagataaaggtcttgctggtgaacctgggtttcctggacagaag
ggtgttgatggaaggcctggcttaccgggttttaaaggcgaacagggtaatccagggttt
ccaggcattgctggattgcgaggacctcctggtcctggaggtccatttggcattaaaggt
gaaccaggtcccaggggagcaagtggcttctcaggatcaccaggatttcctggagccaaa
ggtctgactggtgatgcaggtccaccaggccctgctggtatgaaaggcttcccaggttta
gaaggttttccaggaccacctggggaaagaggattcccagggccacttgggcctgtgggt
agagatggactcccaggtttctccagagcaaaaggtgaaaagggtccacctggtttgatt
ggcttccctggcatgccaggtgtgcctggtgctcctgccatgagtgggctgaaaggaatt
cctggtgcgtctggaagagaaggaaatgttggataccctggaccccctggtcaaaaaggt
gacaggggtgatctgggtccgcctggactcccgatagttaggcctgcagaactggtattc
aagggagacaaaggtggtcctgggtcagttggactgagcggattccctggtcctagaggt
ggcaaagggttccttggaaaccgtggacaacccggtcttcctggtccacgagggccacta
ggcaaagatggaggacaacccggtgatgcagggttccccggcttgcctggaccacctggc
tttccagggcagaaaggcctgcctggaattaaaggattacctggatttccaggagaaagt
ggttcagagggtatctcaggagcaccagggttcccagggactgctggtttccctggtcca
aaaggtgacccaggagaatcacttggaattctgggtaggatgggcaataaaggagaacga
ggggaccgtggattcccaggtgaaaggggaagatatgggccaaagggtgaacctggattc
ccaggaaccattggaatagatgggtctaaaggtatcccaggtgaccttggccgagaagga
ccaccagggcgacctggaattgctggattgagaggaaatgcaggtccccctggttcccca
gggcaacttggacctgtaggatttgtcggactgcctgggatatcagggccaaaaggattc
cctggatttcctggtttaaatggtctgaatggcttgccagggacaaaagggtctcctgga
acaccaggtctgagtgaagctggactgaacggccctgcagggtttccaggacctaagggt
gaagaaggttctccaggcattggcttaggaaacccaggacttcctgggctgaaaggatca
cccggagacatgggtcttcctggtacctcgggtctgcgtggtttgccagggccgcctggc
ctctctcttccttcaaatatacctgggagacgtggtgatcctggccctcctggagtgaat
gggaacccaggcccgccagggcctccagggcctccaggaccctccggccccgcctccaat
caaggtgattctggtgttccaggtttccctggtgctcctggtttgccaggagtaaagggt
gacatgggactccctggtccagttggaattccaggagcttcagggctgaaaggtgtgaag
ggagagccaggctttatggggttgccaggaaaagatgggctgccaggagaccctggaatt
cccgggctgaagggggagcctggtcgtaagggtttccctggcctaccaggtgctccaggc
ctaactccaaaaccagaacccgtcagagttcttccaggactgcctggtttgccaggcatt
gatggtgtcccaggctttattggagatgctggtattcggggaccaattggcaagcaaggt
cctaaaggtctgcctgccagatcaggtcagaagggacgtcctggtttgcctgggccagct
ggtgtagttggcgacccaggactcccaggttttccagggccacaaggactggaaggtgtc
tctggaaagcctggcccatttggtttgcctgggatgccgggtcgaagcataggtgttggc
tacacgttggtgaaacacagccaatctgagcagatcccgccgtgcccagttggaatgaat
aagctttgggagggttacagcttgctctatgtggaggggcaggaaaaggcacacaaccag
gatcttggctttgctggctcctgcttgcctcgctttagcaccatgccatttatttactgc
aacatctatgaggtgtgctactacgccagtcgaaatgataaatcctactggctgtccacc
actgctcccattcccatgatgccagtgagcagtttggagattccgcagtacatcagccgt
tgctcagtatgtgaggcaccttcccaggctattgctgtacatagccaggacataaccatc
ccgcagtgtcctgagggctggcgcagcctatggatcggctactccttcctaatgcacacc
gcagctggggcagaaggcggaggccagtcccttgtctcacccggctcttgcctggaggat
ttccgtgctactcctttcattgaatgcaatggtgccaaaggaacctgccattactttgca
aacaagtacagcttctggctgacaacagtcgaacgcacgcagcagtttgtcagtgatcct
ccctcagaaactctgaaagcgggacagctccgaacgcgagtcagccgttgccaagtgtgc
atgaagaacttgtag
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