Carettochelys insculpta (pitted-shelled turtle): 142020520
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Entry
142020520 CDS
T11194
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142020520 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ciz03021
]
142020520 (SF3B3)
03041 Spliceosome [BR:
ciz03041
]
142020520 (SF3B3)
03036 Chromosome and associated proteins [BR:
ciz03036
]
142020520 (SF3B3)
Transcription machinery [BR:
ciz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
142020520 (SF3B3)
Spliceosome [BR:
ciz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
142020520 (SF3B3)
Complex B
142020520 (SF3B3)
Complex C
U2 SnRNP specific factors
142020520 (SF3B3)
Chromosome and associated proteins [BR:
ciz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
142020520 (SF3B3)
TFTC complex
142020520 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
142020520
NCBI-ProteinID:
XP_074864549
LinkDB
All DBs
Position
14:1840332..1885586
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISYAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPGAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLADNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESSNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFANTG
DDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFHGRIL
IGVGKLLRVYDLGKKKLLRKCENKHIANYICGIHTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctttacaatttaacactgcaacgtgccactggcatcagctatgccatccatggc
aacttctcaggaaccaaacaacaggaaattgttgtttcccgggggaagatcctagagttg
ctccgccctgatcccaatacagggaaagtacacaccttgctgacagtggaagtgtttgga
gtcatccgttccctcatggccttcagactgacgggtggaaccaaagactatattgttgtg
ggtagtgattcaggtcgcatcgttatcctggaataccagccctccaaaaacatgtttgag
aagattcaccaggaaacctttggcaaaagtggctgtcgcagaattgttcctgggcagttc
ttggctgtggacccaaagggccgtgctgttatgatcagtgccattgagaaacagaaactg
gtgtacatcctgaacagagatgctgctgcccgcctcaccatttcttccccactggaggcc
cacaaggccaacaccttggtctaccatgtggtgggggtagatgttgggtttgaaaaccca
atgtttgcttgtcttgaaatggactatgaggaagcagacaatgatccaacaggagaagca
gcagctaacacacagcagaccctgacgttttatgagctagacttgggtttgaaccatgtg
gttaggaaatacagtgagcctttggaggaacatggcaacttccttataacagttcccggt
ggctctgatggtcccagtggggtgctgatttgctctgaaaactacatcacctacaaaaac
tttggtgaccagcctgatatcagatgtccaattcccaggagaaggaacgacttggatgac
ccagagaggggtatgatttttgtctgctctgctactcacaagaccaaatccatgttcttc
ttcctggcccagacagagcagggagatatctttaaaatcaccctagagactgatgaagac
atggtgacagagatccgactgaagtattttgatactgttcctggggctgctgccatgtgt
gtgctgaaaacagggttcctctttgtggcatctgagtttggaaaccattacctgtaccag
atagcccatctgggagatgacgatgaggagccagagttctcctccgctatgcccctggag
gaaggagacactttcttcttccagccacgaccactcaagaacctggtgttggtggatgag
ttggacagtctgtctcccatcttgttctgtcagatagcggatctggccaatgaagatact
ccccagctatacgtggcctgtgggcgagggcctcggtcatctctgagggtcctacgtcat
ggacttgaggtgtctgaaatggccgtctcagagctgcccggtaaccccaacgctgtctgg
actgtgcggagacacattgaagacgaatttgatgcctatattatcgtgtccttcgtaaac
gccaccctggtgctatctatcggagagactgtagaagaagtgaccgactctggattcctg
ggtaccacccccactttgtcctgttcgttgttgggggatgatgctttggtacaggtttat
ccagatggcatccggcacatccgagcagacaaaagagtgaatgagtggaagacaccagga
aagaagaccatcgtgaagtgtgctgtgaaccagagacaagtggtgatagcactgactgga
ggagaattagtctactttgagatggacccatcaggacagctgaatgagtacacggagagg
aaggagatgtcggccgatgttgtgtgcatgagtttggccaatgttcctcctggggagcag
cgttcccgcttccttgctgtcgggctggcggacaacactgtcagaattatttccctggac
ccttcggattgcttacagcccttgagtatgcaggccctccctgcacagccagaatccctg
tgtatcgtggagatgggtgggacagaaaaacaggatgaactgggagagcggggctccatt
ggcttcctatacctgaacattggattacagaacggtgtactgctgcgaactgtcttggat
ccagtcactggagatctgtctgataccagaaccaggtaccttggctcacgccctgtgaaa
ctcttcagagtccgaatgcaaggccaagaggcggtgctggccatgtccagtcgctcatgg
ctgagttattcttatcaatcccgctttcatctaacccccctgtcctatgagactctagaa
tttgcatctggctttgcttctgagcagtgtcctgagggcattgttgctatctccacaaac
acactgaggattttggcgttggagaagctgggggcagtcttcaaccaggttgccttcccg
ctgcagtacacccccagaaagttcgtcattcatcctgagagcagcaacctgatcatcatt
gagacagaccacaatgcttacaccgaggccacaaaggcccagaggaagcagcagatggca
gaggaaatggtggaggctgcaggggaggatgagagggaactggctgcggagatggcagcc
gcctttctgaacgagaaccttcctgaatccatattcggtgcccccaaagcaggcaatggc
cagtgggcttctgtcattcgcgtgatgaaccccatccaaggcaacactctagatctggtc
cagctagagcagaatgaagctgccttcagtgtggcagtgtgtcgattcgccaacaccggg
gatgactggtatgtgctggtgggagtggccaaggacctgattctgaacccccggtcggtg
gccggtgggtttgtctacacatacaagctggtgaataatggtgagaagctggagttccta
cacaagacccctgtggaggaggtaccagcagccattgccccattccacggccgtatcttg
attggcgttggaaaactcttacgtgtctatgacctgggcaagaagaagctgcttcggaag
tgtgagaacaagcacattgccaactacatctgtggcattcacaccatcggacaccgagtg
atcgtgtccgacgtccaggaaagcttcatttgggtgcgctacaagaggaacgagaaccaa
ctgatcatcttcgccgatgacacctacccccggtgggtcaccaccgccaccctcctcgac
tatgacactgtggcaggagcagacaagtttggcaacatctgtgtggtgaggctgcctccc
aacacaaatgacgaggtagacgaggatccgacaggcaacaaggctttgtgggacagaggg
ctcctcaatggagcgtcacagaaggcggaggtgattatgaattaccacgtgggagaaacg
gtgctgtcgttgcagaagaccacgctgattccgggcgggtcggagtctctcgtgtacacc
accttgtcggggggcattgggatcttggtccccttcacgtcccacgaggatcacgacttc
ttccagcacgtggagatgcacctgaggtcagagcacccgcctctctgtggacgagaccac
ctgagcttccgctcctactacttcccagtgaagaacgtcattgatggggacctttgtgag
cagtttaactccatggagcccaacaagcagaagaacgtctcggaggagctggacaggacc
ccgcccgaggtgtccaagaagctggaggatatccgcacacgctacgccttctga
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integrated database retrieval system
