Carettochelys insculpta (pitted-shelled turtle): 142020936
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Entry
142020936 CDS
T11194
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142020936 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142020936 (EDC4)
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142020936 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
142020936 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
WDR55
EIF3I
ApoLp-III
CelTOS
Motif
Other DBs
NCBI-GeneID:
142020936
NCBI-ProteinID:
XP_074865355
LinkDB
All DBs
Position
14:962650..1005322
Genome browser
AA seq
1522 aa
AA seq
DB search
MNVVVSRISQLRLSAGSGVCHHVSYLGRFWKTFPAALTPRDLLCSVVPAEWLKLAAFGPR
DKHSTLLLCWAFGALFGFPACVHCCLLFVSWEDLILMGGAVQELRAGVERALSCAVGIAS
WWGIPQCAMSRRCCLCCCCCSLSGSVSENQRPPNSYNGDLNGLLVPDPTAAGDGAPLAKP
MLRTVPLGALQEKQVICLSGDDSSTCMVISAKDVEIVASSDSSITSKARGSNKVKIQPVA
RYDWEQKYYYGNLIAVSNSYLAYAIRGASNGSAMVRVLSISTAERTLLKGFTGGVADLAF
AHLNSNQLACLDEAGNLFVWRLAMDNGKIQEEILVNIKRPEGTPLNSFRRIIWCPFIPDE
NEESGEEGSQTLALLHEDRAEVWDLDIIRANNSSWPVEVTNIKEGFIVVKGHSTCLSEGA
LSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDPEV
PFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSTSVPPSLKACLDLSAEYLILS
DVQRKVLYVMELMQNQEEGRAYFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPAEEDS
DSLSTEGAQGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDVAAPLPPHGSHEDF
AFPDHLAELGAEGLGSEKGSVHGSQPDLRRIADLPVPADFLSLSNDAKPKLMTPDAFMTP
STSLQQVVVLPGSSVSSLTSVTVMSSTSVGDPAGPRPSEELALSPKMQLDPSLALSSSTS
SLQASPRNHSVLISGLPDKLTPKAPIPVTPANAPLALELQEVEPLAVAQASPTRERSPDV
ISSASTAMSQDIPEIASETLQRSFATAPAPAGLPAEGLEPSHHADSMASAASALHLLSPR
HRHGSEHSQHSLDVAPAGEAARLSTPSLLETALTQDSASSNGGVSQPWPAAPDITRETRN
SMADSPRDDSEEKHKSSACHRHRYHLLQHDSQDTSAEQSDHDDEVASLASTSGGFGTKAS
AQRLPAKDWKAKVSPRASPKLKRKGKRDDGDVTQLPRSSDHQVAAECPEELMSLLRSQQR
ELAELRQNQMELMQRLTDHLDAVQSSLMGHMERVIGSQQEQEQRRLDRALTEGQQRNGQL
QEHLSQQLSQSLSTAACSRLERTVREELKKTVPQCISKSLDPLTGQLSSTVATKLTAVEG
MLKENITKLVKSKNLTDAIARAAAEALQGPIQVAYREAFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYVQQLEVHMKNKKARDQEARDSLLGQLRQLVSTFQSTTDQLASTIASSVHTE
VQHQLHVIVGNMQDSILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPAAHL
DFQAQQAHVLQLLQQGRLNQAFQQALTAADLNLVLYVCETVDPQQVFGQHPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEEAVMHLDHSDPITRDHMGSVMNQVRQKLFQFVQAEPQN
ALSKPARRLMIMLQGLVSPSLA
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttgtggtatctcgcatcagtcagctcaggctgtctgcaggctcaggtgtctgt
caccatgtcagttacctgggtcgtttttggaagactttccctgcagccctaacgcctaga
gacctgctgtgcagcgtggtgccggctgagtggctcaagttggctgcatttggcccacgg
gacaagcattcgacactactgctgtgctgggccttcggtgctttgtttggatttcctgcc
tgtgtccattgctgtctcctgtttgtttcctgggaagacttaatcctgatgggaggagca
gtacaggagctccgtgcgggcgtggagcgtgctctctcctgcgcagtcggcatagccagc
tggtggggcattccacaatgtgccatgtcccgtcggtgttgcctgtgttgttgttgttgt
tctctctcaggttcagtgagtgaaaatcagcgtccgcccaactcgtacaacggggacttg
aatgggctgctggtgccggaccccactgcggctggagatggagctcccttggctaagccg
atgctccgaactgttcctctgggagccctgcaggagaagcaagtcatctgcctttcggga
gatgacagctccacctgcatggtgatatcagccaaagatgtggagattgtggccagcagt
gactctagcatcaccagcaaggccagagggagcaacaaggtaaaaatacagccagtggcc
aggtatgactgggaacaaaaatactactatggcaacctgatagctgtatcaaattcctac
ctggcatatgccattagaggtgccagcaatggctctgccatggttcgggtgttgagcatc
agcacggccgaacggaccttgctgaaaggcttcacgggtggtgtggctgacctggctttt
gcccatctcaactccaaccagctggcctgcctggatgaggctggcaacctctttgtctgg
cgcctggccatggacaacgggaaaatccaagaggagatcttagtgaacataaaacgacct
gagggcaccccactgaacagcttccggagaatcatctggtgccccttcatcccagatgag
aatgaggagagcggtgaagagggaagccagacgttggcgttgctgcatgaggacagggca
gaggtgtgggatctggatattatccgagccaacaacagttcctggccggtggaggtgacg
aacatcaaagagggcttcattgtggtgaaaggtcacagcacgtgcctgagcgaaggagcg
ctctctccggatgggacggtcttggccacagcaagccatgacggctatgtcaaattctgg
cagatctacatagaagggcaagatgagcccaggtgcctgcatgagtggaagccccatgac
ggcaggccactctcctgcctgctcttctgtgataaccacaaaaagcaggacccagaggtc
ccattctggagatttctcattacgggagcggatcagaaccgagagctgaagatgtggtgc
actgtttcatggacctgcctgcagactgtccgcttctcccccgacattttcagttccacg
agtgtccccccgagtctgaaagcctgcctggacctctccgccgagtacctgatcctgagc
gacgtgcagagaaaagtcctgtacgtgatggagctgatgcagaaccaggaggagggcaga
gcttacttcagctccatctcggagttcctcctcacccacccggtcctcagcttcggcatc
caggtggtgagccgctgccggctgcggcacacggaggtcctcccggcggaagaggacagc
gacagcctgagcacggaaggtgcgcagggggctggggctgtcgagtcagcagcaggggtg
ctgatcaagctcttctgtgtccacaccaaggccctgcaggatgtgcagatccgattccag
cctcttcacagtccagacgtggctgccccactccctccccatggctcccatgaggatttc
gcgttcccagaccacctggctgagctgggcgccgagggcctggggtcagagaagggctcc
gtgcacggttcccagccggacttacggcgcattgcagacctgcccgtgccagcagacttc
ctcagcctttccaacgacgccaaacccaagctgatgaccccagatgcgtttatgaccccg
agcacctctcttcagcaggttgtcgtccttccaggcagcagtgtcagttccctgacctct
gtcacagtcatgagcagcacgtctgttggtgacccggccgggcccaggccgtctgaagag
ctggcgctgagcccaaagatgcagctggaccccagcctcgcactgagcagcagtactagc
agcctccaggcaagtcctaggaaccactcagtccttatctccggactccccgacaagctg
accccaaaggctcctatcccggtcactccggcgaacgcgcccctggctctggagctgcag
gaagtggagccgcttgcagtcgcccaggcctccccgacccgtgagcgctccccggacgtc
atttcctcggcctccacggccatgtcccaagatatccccgagatcgcctcggagaccctg
cagcgcagcttcgccacagccccggccccagccgggctccctgcagaggggctggagccc
agccaccacgcggacagcatggcctcggctgcctcggctttgcacctgctgtccccccgg
caccggcacggctcggagcacagccagcactccctggacgtggcccctgcgggggaggca
gccaggctgagcacaccctcgctgctggagacggccttgactcaggacagtgcctcttcc
aacggcggcgtgagccagccctggccggcggcccccgacatcaccagggagacaaggaac
agcatggcagacagcccccgggacgacagtgaagagaaacacaagagctcagcctgtcac
aggcacagataccacctgcttcagcacgacagccaggataccagcgcagagcaaagtgac
catgacgacgaagttgcaagtttggcttctacctctggtgggttcggtaccaaagcgtct
gcgcagaggctgcctgcaaaggactggaaagccaaggtgtccccccgggcttcccccaag
ctcaaacggaagggcaagagagacgacggggatgtgacccagttgccaagatcaagtgac
caccaggtggcagccgagtgcccagaggagctgatgtctctgctgcgaagccaacagagg
gagctcgcggagctgaggcagaaccagatggaactaatgcagaggctcaccgaccacctg
gacgctgtgcagagctccctcatgggccacatggagcgagtcatcggctctcagcaagag
caagagcagcggaggctggatcgggccctgaccgagggacagcagcgtaacgggcagctc
caggagcacctgtcccagcagctctcgcagtccctctccactgctgcctgcagccgcctg
gagaggaccgtgcgcgaggagctgaagaagacggtgccccagtgcatttccaagagcctg
gacccgctcacaggccagctgagcagcactgtggccaccaagctcacagctgtcgagggg
atgctgaaggaaaacatcaccaagctggtgaaatccaagaacctgacggatgccattgcg
agggcggcagcggaagccctgcaggggcccatccaggtggcatacagggaggccttccag
agcgtcgtgttgccagcctttgagaagagctgccagtccatgttccaacaaatcaacgac
accttcaagcaggggacacaggagtatgtccagcagctggaggtgcacatgaagaacaag
aaggcgcgagaccaggaggcccgagattcccttctgggccagctccggcagctggtcagc
accttccagagcaccacggaccagctggcctccaccatcgcctccagcgtgcacaccgaa
gtgcagcaccagctgcacgtcatcgtgggcaacatgcaggactctattctggcccaggtg
cagcgggtcatcaagggcgaggtgagcctggccatgaaggagcagcaagcggccgtcacc
tccagcatcgtgcaggccatgcgctccgcagcaggcacgcccatccctgctgctcacctg
gacttccaagcgcagcaggctcacgtcctccagctgctgcagcagggccgcctcaaccag
gctttccagcaggcgctcacggcagctgatctgaacctggtgctgtatgtctgtgagacg
gtggatcctcagcaggtgtttggccagcacccctgcccgctctcccagcccgtcctcctg
tcgctcattcagcagctctcctcggacctgggcacccgcacagaactgaaactgaattat
ctggaggaggcagtgatgcacctggaccacagtgaccccatcacccgtgaccacatgggc
tccgtcatgaaccaggtgcggcagaagctcttccagtttgtgcaggcggagcctcagaac
gccctgagcaagccggcccgccgcctcatgatcatgctgcagggcctggtctcccccagc
ctggcctaa
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integrated database retrieval system
