Carettochelys insculpta (pitted-shelled turtle): 142021009
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Entry
142021009 CDS
T11194
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03440
Homologous recombination
ciz03450
Non-homologous end-joining
ciz04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
142021009 (RAD50)
03450 Non-homologous end-joining
142021009 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
142021009 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ciz03032
]
142021009 (RAD50)
03400 DNA repair and recombination proteins [BR:
ciz03400
]
142021009 (RAD50)
DNA replication proteins [BR:
ciz03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
142021009 (RAD50)
DNA repair and recombination proteins [BR:
ciz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
142021009 (RAD50)
BRCA1-C complex
142021009 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
142021009 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
AAA_29
AAA_24
AAA_13
Motif
Other DBs
NCBI-GeneID:
142021009
NCBI-ProteinID:
XP_074865462
LinkDB
All DBs
Position
15:complement(22790380..22839758)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIDKMSILGVRSFGVEDKDKQVITFFSPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGHSFVHDPKVANETDVKAQIRLQFRDINGELVAVQRSMVCTQKGKKTEFKTLEGLITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVINNVIFCHQEESNWPLSEGRALKQKFDEIF
SATRYIKALDTLRQVRQKQTLRVKECQTELKYLKQNKEKAREIQDNLENRETQLAASKEN
VKSIENQLEPLKNRLAEIEQNLVKVMRLDNEIKALDSRKKQMEKDNQDLQQKMEKVFQGT
DDQLRDMYQNHQRTVKEKERRLTDCQRELDRASKECQRFNREKSELLVEQGRLQLQADRH
QQDIRTRDSLIQTLAALLELDGFQRSPFNERQINSFHRLVKERQEREVEAASQLMREFTE
KEIMKQKQIDDIRDKKTGLEKTIDLKSDIQNKKQLELKNVKYELNQLEESSDRILELDQE
LIKAECELHKAEKNSNVDVLDLEVQKLQSEKANLDKVLRKLDQEMEQLNLHTMTITQVDM
LKKDKVDKEEQIRKIKSRHTDELTSLLGYFPDKRQLEDWLHAKTREINQTRDKLAKLNTE
LASAEQNKNHISMELRKREEQLSTYEDELFEVCGSQDFDSDLYKLQDEIEKTSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRIFETESELQDVISDLQSKLRLAPDKLKSTESELK
RREKKRDEMMALKPKRQTIAEFKEKDIPDLRNKLQTINRVIQRLKSDVEEQEALLGAIIA
EEESAKACLQDITLMERYQTDLRDVERKIAQQATKLKGVDLSRTVLQVSQEKQEKNHLLD
TVTGKIELNQKLKQDQQAQMQQLKSTVNDLKAEKLQISSNMQRQQQLEDQTVELSTEVQS
LYREIKEAKDQLVPLESTLEKLQQEKVDLINKKNTSNEVTQAKINEIKEKVKNIHNYVKA
IESYVQEGREDYKKQKESELDEVKTQLADCEKQKEKISKEMGAIRQDIDTQKIQERWLED
NLTLRKRSEDLKEVDKERKQYMKEMGEMKVPQLKDERQHLELKIEELKRNHSLALGRQVG
FEQEIIRFKKELRESQFRDAEEKYREMMIVMRTTELVNRDLDMYYKALDKAIMTFHSMKM
EEINKIIRDLWRNTYRGQDIEYIEIRSDADENVSASDKRRSYNYRVVMIKGATALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSVSSLGSYDH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctaggattgataagatgagcatccttggagtgaggagttttggggtagaagacaaa
gacaagcaagttatcactttctttagtcctttaaccattttggtgggcccaaatggtgca
ggaaaaacgactatcattgaatgccttaaatatatttccactggagatttccctccaggc
accaaaggacactcatttgttcatgatccaaaggttgctaatgaaacagatgtcaaagct
cagattcgactgcaatttcgtgatattaatggagagcttgtagctgtccagcgatccatg
gtttgtactcagaaaggcaagaaaacagaatttaaaacccttgaaggtctcataacccga
acaaagcatggggagaaggtcagtctcagttccaagtgtgcagaaattgaccgagagatg
atcagcgcccttggtgtttccaaatcagtgattaataatgtcattttctgtcatcaagaa
gaatccaactggcccttaagtgagggaagggccctgaaacaaaaatttgatgagatcttc
tcagcaacaagatatattaaagcactggacactcttcgtcaggtacgtcagaagcaaacc
ttgagggtaaaagaatgtcagacggaactgaaatatctaaaacaaaataaagaaaaagca
cgtgaaattcaagataatcttgaaaatagggaaactcaactggctgcttctaaggaaaat
gtaaaatctattgagaatcaacttgagcctctaaagaaccgtctggcagaaattgaacag
aatcttgtaaaagtaatgagacttgacaatgagattaaagctctggacagcagaaaaaag
cagatggaaaaagataatcaggatttacaacagaagatggagaaggtttttcaaggaaca
gatgaccaactaagagatatgtaccagaaccatcagagaacagtaaaagaaaaggaaaga
cgattaacagactgtcaacgtgagctggatagagcaagcaaagaatgccagagattcaac
cgagagaaatcagaattacttgttgagcaaggacgtcttcagctacaagcagatcgtcac
cagcaggacatcagaaccagagattcattaatccagactttggcagcactgttggaattg
gatggttttcaaagatcaccttttaatgaaagacaaattaacagcttccataggcttgtg
aaagagagacaagaaagagaagtagaagctgccagtcagttaatgagagaatttacagaa
aaagaaataatgaaacaaaaacagatagatgatataagagataagaaaactggactggaa
aaaaccattgacctgaagtcagacattcaaaataagaaacagcttgaactgaagaatgtg
aaatacgaactgaatcagctggaggagtcttcagacaggattctggaactggatcaggaa
ctcatcaaggctgaatgtgaactgcataaggctgagaaaaacagcaatgtggatgttctt
gatctggaggtacaaaaacttcagagtgagaaagcaaacctggacaaggttcttcggaaa
ttggatcaggagatggaacagctaaacttgcataccatgacgatcacccaagtggatatg
ttgaagaaagacaaagtggacaaagaggaacagatcagaaaaataaaatctagacacact
gatgaactgacctctttgctgggatattttcctgacaaaagacagcttgaggattggctt
catgctaaaactagagagattaatcagacaagagacaagcttgccaagcttaacacagaa
ctagcttcagcagaacaaaataaaaatcatatcagtatggagttaagaaaaagagaagag
cagttgtccacttacgaagatgaactttttgaagtttgtggaagccaagattttgacagt
gatctatataaactgcaggatgaaattgaaaagacctcaaagcagcgagctatgcttgct
ggagccacagcagtttattcacagtttataacgcagctgacagatgagaaccagtcgtgt
tgcccagtttgtcagaggatctttgaaacagagtcagagctacaagatgtaattagcgat
ctgcagtccaagttacgtcttgctccagacaaactgaaatcaacagagtctgaacttaaa
agaagagaaaagaagcgtgatgaaatgatggcacttaaaccaaaaaggcagaccatcgct
gaatttaaagaaaaggacataccagacttaagaaacaagctacagactataaacagagtt
attcagcgcctaaaaagtgatgtagaagaacaagaagctctcttaggtgctattatagct
gaggaggaaagtgccaaagcatgtttacaagatataacacttatggaaaggtatcaaact
gatctaagggatgttgaacgaaaaattgcccagcaggccactaagctgaaaggagtagac
ttgagtcgaactgttctacaagtaagccaggaaaaacaggaaaaaaaccacctattggat
acagttactggtaaaattgagttaaatcaaaaacttaaacaggaccagcaggctcagatg
cagcagctaaagagtacagtgaatgatcttaaagcggagaagctacagatttccagtaat
atgcagcgtcagcaacaactggaggatcagactgtggaactgtccactgaggttcagtct
ctgtatagagagatcaaagaagcgaaggatcagctggttcctttagaatcaactttagaa
aaacttcagcaagagaaagtagatcttatcaacaaaaagaacacaagtaatgaagtaaca
caagcaaagataaatgagatcaaagaaaaagttaaaaatatccataactatgtgaaagca
attgagagctatgttcaagaaggaagagaagactataaaaagcaaaaagaatctgaactt
gatgaagtaaaaactcaactagctgattgtgagaaacagaaagaaaagataagtaaagag
atgggagcaattagacaagacattgatactcaaaagatccaagaaagatggctagaggat
aaccttacattaagaaaaagaagtgaagatctgaaagaagttgacaaagaacgaaaacaa
tatatgaaggagatgggggaaatgaaagttccacagctaaaagatgaacgacaacatctg
gagttgaaaatagaggagttgaaaagaaatcacagtttggcattaggtcggcaggttgga
tttgaacaagagatcattcgttttaaaaaagagcttcgagaatctcagttcagagatgct
gaggaaaagtacagagaaatgatgattgtaatgagaacaacagagcttgtgaacagggac
ctagacatgtactacaaggcactcgataaagcaataatgacatttcacagcatgaaaatg
gaagaaatcaataaaattattcgtgatctttggcgaaacacctacagaggtcaagatatt
gagtatatagaaattcgttctgatgcagatgaaaatgtttcagcgtctgataaaagaagg
agctacaattatagagtagtaatgattaaaggagcaactgctctggacatgcgagggaga
tgcagtgctgggcaaaaggttcttgcttccctcattattcgtcttgctctggcagaaaca
ttctgcctcaactgtggcattcttgcactagatgagcctactaccaatcttgatcgagag
aacattgagtctcttgcacatgctctggtggagataataaaaagccgctcacaacagcgc
aactttcagcttcttgtcataacgcatgatgaagattttgtggagcttttgggccgttct
gaatatgtggagaaattctacaggataaagaagaacattgatcaatgttctgagattgtg
aagtgcagtgttagttccttaggttcttatgatcactag
DBGET
integrated database retrieval system
