Carettochelys insculpta (pitted-shelled turtle): 142021093
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Entry
142021093 CDS
T11194
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
142021093 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ciz01009
]
142021093 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ciz04515
]
142021093 (PCDH1)
Protein phosphatases and associated proteins [BR:
ciz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
142021093 (PCDH1)
Cell adhesion molecules [BR:
ciz04515
]
Cadherins
Protocadherins
142021093 (PCDH1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_FAT4_N
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
Mid2
Motif
Other DBs
NCBI-GeneID:
142021093
NCBI-ProteinID:
XP_074865645
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All DBs
Position
15:complement(674896..796058)
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AA seq
1239 aa
AA seq
DB search
MGAFPCSQPGCTGPVGSKGLGVEHAVPTLWCLCFLAGPLLRRMTRLAACLGLGLFLQLPA
LGSGTLVIYKVQEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIYTTET
SIDRESLRECQNQSPGEPCFLEFEVSITDLMNSSPRLLEGQIEVLDINDNTPNFASPVIT
LVIPENTNIGALFPIPVAMDRDAGINGVASYELQAGPEAQELFGLQVAEDQGEKQPQLIV
MGNLDREQWDSYDLTIKVQDGGSPPRASSALLRITILDMNDNTPKFEKALYEAELSENSP
VGHSVLQVKANDSDQGPNAEIDYSFHQATDMVRRLLRLDRASGVITVQGPIDREDVSVLK
FSVLAKDKGANPKSARTQVVVTIKDTNDNAPSIEIRGIGLVAHQDGMANISEDVPVETAV
ALVQVSDRDEGENAVVTCVVAGDVPFQLRPASETGSDSKKKYFLQTTTPLDYEAVKEYTI
EIVAVDSGNPPLSSTNSLKVQVVDVNDNAPVFSQSLTEVAFPENNAPDDLVVEVSASDAD
SGSNAKLVYSLVTDPSSKGLFAIDPDSGEIRVKTVLDREQRERYEFLVVAADKGSPSLKG
TASVAINVMDRNDNDPKFMLSSYNFSVMENMPPLSPVGMVTVIDADKGDNARIQLSVEQD
NGDFVIQNGTGTILSSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPF
ITSPSNASYKHILPHTSPGQQVNKVKAEDIDSGVNAELSYSITGGNPFELFQISPQSGDI
TLEKEIERKHHGLHRLVVRVNDRGKPSRYGTALVHFYVNETLANRTLLETLLGHSLDTPL
DIDIAGDPDYERSKQRSNILFGVIAGIVAVTLLIVLVVLVRYCRQREAKSGYQAGKKETK
DLYAPKQGSKSSKSKSKVKKSKSPKPPKPAEDEEETGLQKSLKFNLMNDSVSDSPRIHLP
LNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPAANTFVGTGDSTSTGSE
QYSDYSYRTNPQKYTNKQLPHRRVTFSAANQAQDSQDPSQHSYYDSGLEESETPSSKSSS
GPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWM
PGQSSPSRRPKNALKLSTFVPYQERGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSN
SSHEPCKDSPLEEIPLTQTSDFQPATTPSSQTTKREIYL
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atgggggcttttccctgttcccagccaggctgtacagggcctgtagggagcaaggggctg
ggggtggagcacgctgtacctaccctgtggtgtctgtgcttccttgcaggccccctcctg
cgcaggatgacacggctggcagcttgcctgggtctggggctttttctgcagctccccgcc
ctgggctccgggacgctcgtgatctacaaggtgcaggaggagcagccgcccaacacgctc
attgggagcttggctgccgactatggctttcctgacgtggggcacctctataagctggag
gtgggggccccctacctgcgtgtggatggcaagacaggggacatttacaccacggagacc
tccattgaccgggagagcctgcgggagtgccagaaccaatccccaggggagccctgcttc
ctggagtttgaggtgtccatcacggacctgatgaacagcagcccgcgtctgctggagggg
cagattgaggtgctggacatcaatgacaacacgcccaactttgcttcccctgtcatcaca
ctggtcatccctgagaacaccaacatcggggcgctcttccccatacccgtggccatggac
cgcgacgcaggcatcaatggggtcgcctcctacgagctccaggcagggcccgaggcgcag
gagctctttggcctgcaggtggctgaggaccagggtgagaagcagccacagctgattgtc
atggggaacctggaccgggagcagtgggactcctatgacctgaccatcaaggtgcaggac
ggaggcagccccccgcgggcgagcagcgccctgctgcgcatcaccatcctggacatgaac
gacaacacccccaagtttgagaaggccctgtacgaggcggagctctcggagaacagcccc
gtggggcattccgtcctgcaggtgaaagcaaacgactcggatcagggccccaacgctgag
attgactattccttccaccaggccacggacatggtacgccgcctgctgcgcctggacagg
gcctcgggcgtcatcaccgtgcaggggcccattgaccgggaagacgtcagcgtcctcaag
ttttccgttttggccaaggacaagggggccaaccccaagagcgcccgcacccaggtggtg
gtgaccatcaaggacacgaatgacaatgccccctccatcgagatccggggcatcggcctc
gtcgcccatcaggacggcatggccaacatctctgaggacgtgcccgtggagacggccgtg
gctctggtgcaggtgtctgaccgggacgagggtgagaatgcggtggtcacctgcgtggtt
gctggggacgtcccatttcagctgaggccggctagcgagacaggcagcgacagcaagaag
aagtacttcttgcagaccactacgccgctggactacgaggcggtgaaggagtacaccata
gagatcgtggctgtggactcggggaacccacccctctccagtaccaactccctcaaggtg
caggtggtggatgtgaatgacaacgccccggtcttcagccagagcctcaccgaggtggcc
ttccccgagaacaacgcccccgatgacctggtggtggaggtgagtgccagcgatgccgac
agcggctccaatgccaaactggtttactccctggtcacggacccctcctcaaagggcttg
tttgccattgacccagattcgggcgagatccgcgtgaagacggtgctggaccgggagcag
agggagcgctacgagttcctagtggtggcggctgacaagggcagccccagtctcaagggc
acggcctccgtggccatcaacgtcatggacaggaatgacaatgaccccaagttcatgctg
agcagctacaacttctcagtgatggagaacatgcctcccctgagcccggtgggcatggtg
acggtcattgacgctgacaagggcgacaatgctcgcatccagctttcagtagagcaggac
aatggggactttgttatccagaatggcaccggcactatcctctccagcatctcctttgac
cgggagcagcagagcacgtacacttttcggctcaaagctgtggatgggggggaccctccc
agatccgcctacgtgggcgtcaccatcaacgtgctggatgagaacgataatgcccccttc
atcacctccccttccaatgcctcctacaagcacatcctgccccacactagccccgggcag
caggtcaacaaggtcaaggctgaggacattgactccggggtcaatgcggagctgtcctac
agcatcacggggggcaacccctttgagctgttccagatctcgccgcagagtggggacatc
accctggagaaggagatcgagcgcaaacaccacgggctgcaccgcctggtggtgcgcgtc
aatgaccggggcaagccctcacgctacggcaccgcgctggtgcacttctacgtcaacgag
accctggccaaccgcacgctgctggagacgctgctggggcacagcctggacacgcccctg
gacatcgacatcgccggcgaccccgactacgagcgcagcaagcagcgcagcaacatcctc
tttggcgtcattgccggcatcgtggccgtcaccctgctcatcgtgctggtggtgctggtg
cgctactgccggcagagggaggccaagagcggctaccaggcgggcaagaaggagaccaag
gacctgtacgcccccaagcagggcagcaagagcagcaagagcaagagcaaggtgaagaag
agcaagtccccaaagccgcccaagccggccgaggacgaggaggagacagggctgcagaaa
tctctcaagttcaacctcatgaacgactcggtcagtgacagcccccgcatccacctgcct
ctcaactacccgcccgggagccccgacctggggcgccactaccgctccaactccccgctg
ccctccatccagctgcagccccagtcaccctctgcctctaagaagcaccaggtggtgcag
gatctacctgctgccaacacctttgtgggcaccggggacagcacctcgacgggctccgag
cagtactctgactacagctaccgcaccaacccccagaaatacaccaacaagcagttacct
catcgccgagtcacgttctctgcagctaatcaggcacaggactcgcaggacccctcacag
catagttattatgacagcgggctagaagagtcagagacgcccagcagtaagtcatcatca
ggaccccggattgggccgttagctctgcccgaggatcattacgagcgcaccacacccgat
ggtagtattggggagatggagcaccccgagaacgatctgcgccctctgcctgatgtagcc
atgactgggacctgcacccgggagtgcacagagtttggccactccgacacctgctggatg
cccggccagtcctccccaagccgcaggcccaagaacgccctgaaactctccacttttgtg
ccttaccaagaacgggggagtcaagagcaagttgggaacggcagccccaggctctcagaa
gagcgcagcaccaaaatggccaacctccgcctgctccccacatacagtgccttctccaac
agtagccatgagccctgcaaggactcccctctggaggaaattcctctcacccagacctca
gacttccagccagccaccaccccctcctctcaaaccacgaagagggagatctacctgtga
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