Carettochelys insculpta (pitted-shelled turtle): 142021162
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Entry
142021162 CDS
T11194
Symbol
CNOT6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142021162 (CNOT6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142021162 (CNOT6)
Enzymes [BR:
ciz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
142021162 (CNOT6)
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142021162 (CNOT6)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
142021162 (CNOT6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_14
LRR_8
LRR_4
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
142021162
NCBI-ProteinID:
XP_074865785
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All DBs
Position
15:30461652..30557497
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AA seq
557 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSNWAELEISGRVRSLSSSLWSLTHLTALHLSD
NSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLF
QLQTLGLKGNPLTQDILNLYQEPDGTRRLLNYLLDNLAGTAKRISTEHPPPRSWIMLQEP
DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKAIMQEILSCNADIISLQE
VETEQYYSFFLTELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFILVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPQLGMEKQLVLVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIIDKAARSLKPGVSGELGTIPLVLCADLNSLPDSG
VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGTTNGRITHGFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSKPQLNILGILGPLDHHWLIENNISGCPHPLIPSDHFSLFAQLEL
LLPFLPAVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaagtacgatccacctgatccacggaggatgtacacaattatgtcctcg
gaggaagcagccaatggaaagaaatcaaattgggcagagttggaaataagtgggagagta
agaagcttaagttcatccttgtggtcactgacccatttgacagctttgcatctcagtgac
aattccttatcccgtattccttcagacattgccaagcttcacaatctggtatatctggac
ctgtcctctaataaaatccgcagtttaccagcagagctcggaaacatggtgtcactcagg
gaactccatttaaataacaacctgttacgggttctaccctttgagctgggaaaactattt
caattacagacattaggtctgaaaggaaatccacttacacaggatatactgaatctgtac
caggaaccagatggaacacgaaggctactgaattatttgctagataatttggcaggtact
gcaaaaagaatttcaacagaacatccacctccaagatcttggattatgttgcaagaacca
gatcgaacaagaccaacagccttgttttctgtcatgtgttacaacgtgctttgtgataaa
tatgccacccggcagttatatggctattgtccatcatgggcactgaactgggagtacaga
aaaaaagccattatgcaggaaatcttgagctgcaatgctgacatcataagtcttcaggag
gttgaaactgagcagtactacagttttttcctgacagaactgaaggaacgtggctataat
gggttcttcagtccaaaatctagagctaggacaatgtcagaacaggaaagaaaacatgtt
gatggttgtgcaatatttttcaagactgaaaaatttatcttagttcaaaaacatactgtt
gagttcaatcaactagctatggcaaactcagaagggtctgaagctatgctgaacagagtt
atgacaaaagataacattggagttgctgtgttgctagagctgcgaaaggaattaatagaa
atgtcatctggaaagccacaacttggaatggagaagcagctagttcttgtagctaatgca
catatgcactgggaccctgagtactctgatgtgaagctggttcagacaatgatgttcctc
tctgaagtaaagaacattattgataaagccgctcgtagcctcaaacctggagtttcaggg
gaacttggaaccattccacttgtactgtgtgcagatctcaattctctgccagattctggt
gttgttgagtacttgagcactggtggggtggaaacaaaccataaagattttaaggaactg
agatacaatgaaagtcttaccaacttcagttgcaatggaaaaaatggaacaacaaatgga
aggatcacgcatggtttcaagttgaagagtgcctatgagaacggcctaatgccttacaca
aattatacgtttgactttaagggtattattgactacatcttctattctaaacctcagcta
aatatacttggcattcttggacctttggatcatcattggttaatagagaacaatataagt
ggctgtccacatccactcatcccttcggaccacttctcactttttgcacaactggagctt
ttgctgcctttcctgcccgcggtaaatggaatccatctccctggcaggaggtag
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