Carettochelys insculpta (pitted-shelled turtle): 142022012
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Entry
142022012 CDS
T11194
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03018
RNA degradation
ciz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142022012
09123 Folding, sorting and degradation
03018 RNA degradation
142022012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142022012
03041 Spliceosome [BR:
ciz03041
]
142022012
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
142022012
mRNA degradation factors
5'-3' decay
Lsm complex
142022012
Spliceosome [BR:
ciz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
142022012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Gemin6
Motif
Other DBs
NCBI-GeneID:
142022012
NCBI-ProteinID:
XP_074867513
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Position
17:3935286..3940232
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AA seq
133 aa
AA seq
DB search
MAISREEVKEPGADRGHRGKQLQEQCLVNAGNGSVAAMTSTLENYINRTVGVITSDGRMI
VGTLKGLDQTSNLILYESQERVFSSSQGVEQVILGLYIVTGDNVAVIGETDEGTDSARDL
GNIRAAPLNSVAH
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atggccatcagcagagaggaggtgaaagagccaggggctgacagaggccaccgtgggaag
cagttacaggaacagtgtttggtgaacgcagggaacggatccgttgctgccatgacctcc
acgctggagaactacatcaaccgtactgttggagtaattacctctgatggaagaatgatt
gtgggaaccctcaaaggtttggatcagaccagcaacttgattttgtatgaaagccaggaa
cgagtgttcagttcttcacaaggagttgaacaagtcatattgggattgtacattgttaca
ggagataatgtagcagttattggtgaaactgatgaagggacagattcagcacgtgactta
ggaaatattcgagcagcacctttgaattcagtagcacactga
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