KEGG   Carettochelys insculpta (pitted-shelled turtle): 142022120
Entry
142022120         CDS       T11194                                 
Symbol
CSTF1
Name
(RefSeq) cleavage stimulation factor subunit 1 isoform X1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
ciz  Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ciz00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    142022120 (CSTF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ciz03019]
    142022120 (CSTF1)
Messenger RNA biogenesis [BR:ciz03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     142022120 (CSTF1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd CSTF1_dimer WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_VPS8 Beta-prop_DCAF4 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_NWD2_C Beta-prop_NUP159_NUP214 PROPPIN VPS8_N Beta-prop_WDR11_1st Beta-prop_WDR75_2nd Beta-prop_HPS5 Frtz Beta-prop_SPT8 DUF7099
Other DBs
NCBI-GeneID: 142022120
NCBI-ProteinID: XP_074867733
LinkDB
Position
17:complement(15087491..15110080)
AA seq 517 aa
MAARPGVRRLSGRRVPSLCERRLLPRGLCNVLPPPPEPRPLRLPFLEAETSAVTRTSSGS
RPGSWLHPIVLFHSSQKAPTRHSLLTMYRTKVSLKDRQQLYKLIISQLLYDGYINIANGL
INEIKPQSVCAPSEQLLHLIKLGMENDDSAVQYAIGRSDTVAPGTGIDLEFDADVQTMSP
EASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNE
TAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYI
QEAEMLRSISFHPSGDFILVGTQHPTLRLYDVNTFQCFVSCNPQDQHTDAICSVNYNASA
NMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVAKLWE
ISTGRTLVKYTGAGLSGRQVHRTQAVFNHTEDYVLLPDERTISLCCWDSRTAERRNLLSL
GHNSIVRCIVHSPTNPGFMTCSDDYRARFWYRRSTTD
NT seq 1554 nt   +upstreamnt  +downstreamnt
atggcagcgaggcccggtgtgaggaggctgtccggccgtcgggtgccctcgctctgtgaa
agacgtctgcttccgcggggcctgtgtaacgtgctccctccccctcctgaaccacggccg
ctgcggctgccttttctggaggctgagacttctgctgttactagaacttcctctggttcc
agaccaggctcctggctccaccctattgtcctctttcattcctcacaaaaggcacccaca
aggcattccttgctcacaatgtatagaacaaaagtaagcttgaaagatcgacaacaactt
tacaaactgattattagtcagttgctgtatgatggatatataaacattgccaatggccta
ataaatgagataaaaccacaatcagtctgcgcaccctctgaacaactgctgcatctcatt
aaactaggaatggagaacgatgacagcgcagttcagtatgcaattggacgctccgataca
gtagctccaggaacagggattgacttagaatttgatgcagatgtccagactatgtcacct
gaggcttctgaatatgagacctgttacgtcacatctcataaaggcccatgtcgtgtagct
acctatagcagagatgggcagttaatagctacaggatctgctgatgcttcaataaaaatc
cttgatacggagagaatgttggcaaaaagtgctatgcccatcgaggtaatgatgaatgag
acagcacagcagaatatggaaaatcatcctgttattcggactttatatgatcatgtagat
gaggttacatgtttagctttccatccaacagaacagatcctggcatccggttcaagggat
tatacacttaaattgtttgactattcaaagccttctgccaagagagctttcaagtatatc
caggaagcagaaatgttacgctccatctcttttcatccttctggagacttcatacttgtt
ggtacccagcaccctactttacgactttatgatgtcaatacattccagtgttttgtgtct
tgcaatcctcaagatcaacacacggatgctatatgttcagtaaattataatgcaagtgct
aacatgtatgtgactggaagcaaggatggttgcatcaaattatgggatggtgtttcaaat
cggtgcatcactacttttgagaaagcacatgatggggctgaagtctgttctgccatcttt
tccaaaaattcaaagtacatcttgtcaagtggaaaagactctgttgctaaactatgggaa
atatccacaggtcgaacattggtcaaatatacaggagctggtttgagtggacgacaagta
cacagaacacaggcggtctttaaccatacagaagactatgtactactacctgatgaaagg
accataagtctctgctgttgggactcaagaactgcagaacggcgaaatcttctctcattg
ggacataatagcattgtccgctgtattgttcattctcctactaatcctggtttcatgaca
tgcagtgatgactacagagctcgattttggtaccgaaggtcaaccacagactaa

DBGET integrated database retrieval system