Carettochelys insculpta (pitted-shelled turtle): 142023863
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Entry
142023863 CDS
T11194
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142023863 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142023863 (NUP188)
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
142023863 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
142023863
NCBI-ProteinID:
XP_074871360
LinkDB
All DBs
Position
21:12115242..12185675
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AA seq
1756 aa
AA seq
DB search
MAAGGLCARSSRELWTILLGRSALREPAQIAAELNKHWQRLLEGLSYYKPPSASSAEKVK
ADKDVAAPLKELGLRISKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDERQSQALM
LKLADYYYEERMCILRCVLNLLTYFQDERHPYMAQYSQCVEKLDKELVPNYRKQFEDLYK
AEAPTWETHGSLMTERQVSRWFVQCLREQSMLLEVIFLYYAYFEMAPDELLAFAQLFKDQ
GFGSRQTNRHLVDESMDHLVDRIGYFSALILVEGMEIDSLHERVLDDRTEEHKFASNGHL
HQEMDHLLLSLGDISHHAPVLLAWALLRHTVTPEESTNAIRRMGSTAIQLNVFQYLTKLL
RSLSSGGKNCTASTACMCIYGLLSFVLTSLELHTLGNQQDIIDAACEVLAASSIPQLFWR
TEPTAGLGIILDSVCGMFPHLLSPLLQLLKALVSDKSTAKKVYTFLDKMSFYIELYKHKP
PDVISHEDGTLWRRQVPKLLYPLGLGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTL
FTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDVSIADCLLPITSRIYMLLQRLT
TVISPPVDVIASCVNCLTVLAARMPAKVWTDLHHTGFLPFVANPVSSMSHMISAEGMNAG
GYGNLLMSVEQPQGEYGVTISFLHLITTLVRGQLGSTQSQGLMPCIVFVLKEMLPNYHKW
RYNSHGVRERIGCLILQLIHAILNLCPEMDPHSSSAPSLQSLCIFSLANTEAGQAVINIM
GIGVDTIDMVMASQSSSCIHSLENFKGIARIADLWNDESLGQGQLLIQTVKLAFSVTNNV
IRLKSPSSVVSPLEQALTQHGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPM
SVYACLGSDAAAIRDAFLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDG
NDGSKEFSLGEWSCLQVVLELTDSKQQERYWCPPLLHRAAIAFLHALWQDRRDSAMLVLR
TKPKFWENLTNPLFGTLAPPSETSELSVLDTCALIMKIICLEIYYVVKGSLDQSLKDTLK
KFSTEKRFAYWSGYVKSLALHMAETEGSSCTSLTEYQMLISAWRMLLIISTSHADIMHLT
DSAVRHQLFLDVLSGTKALLLVPMSVLCLQLGSMLCTLLLILLRQWKSELGSVDKIINSL
TQILEGVLQADQQMMEKTKAKVFSALITVLHMKEMKVSEIPQYSQLVMSVCETLQDEVIV
LFDQTRHSLTSGDSADDKDSMETDDACRGKHKDQRDGVCVLGLHLAKELCEVDEDGDYWL
QVTRKVPLLPTIFTALEISLRVKQNLHFTEASLHLLLTLARTQQGAAAVAGAGVTQSICL
SLLSVYQLSTNGTIQTPASSRKSLDAPSWPGVYRLSISLMERLLKTLRYNFLTEALDFVG
VHQERILQCLNAVRTVQSLSCLEEADHTVGFILQLSNFMREWHFHLPQLLRDIQVNLCYL
CQACTSLLHSRKMLQHYLQTKNGDSLPSTVTPRMQRTPHASSKHPSPESEAAEQKALRTV
QYGLLRILSKSLAALRHFTPDVCQILLDQSLDLAEYNLLFVLNFTTPAFDSEVPPCFGTL
LATVNVALNMLGELDKKKEPFAQAAGLNTQEETKTLKSLLMFTMENCFYLLISQAVRYLR
DPAVHPRDKQRMKQELSSELSTLLSSLSRYFRRGGPSSPASGVLPSPQGKSTSKMGPEGQ
EPLIQLVQAFVRHVQR
NT seq
5271 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggcgggctgtgtgcgaggagcagtagggaactctggaccattctgttgggc
agatctgctttgagggaaccagctcagattgcagcagagttaaacaaacattggcagagg
ctgttagaggggctttcatactacaaacctcccagtgcaagttcagcagaaaaagtaaaa
gctgataaagatgtcgctgccccattgaaggaactgggcctgaggatcagcaagtttttg
gggctggatgaagagcaaagtgtgcagctgttgcagtgttatcttcaagaggattacaga
gggacccgggactcgcttaagactgtgctacaagatgaaaggcagagtcaggctttgatg
ctgaagcttgctgactattactatgaagaaagaatgtgcattctgcgctgtgtgctcaac
ctgctcacttattttcaggatgagaggcacccctacatggcacagtactcgcaatgtgtt
gagaagctggacaaggaactggttcctaattaccggaaacagtttgaagatttatacaaa
gcagaagctcctacgtgggaaacacatggaagtctcatgacagagcgccaggtatcccgc
tggtttgttcagtgcctccgggagcagtccatgctcctagaagtcatcttcctttattat
gcatactttgagatggcacctgatgagctgttggcctttgcacagctgttcaaagaccag
ggatttggctctagacagaccaacaggcacttggtggatgaaagcatggatcatttggtg
gatcgtattgggtacttcagtgctcttatcctggtggagggcatggaaattgactccctt
catgaacgtgtgttggatgataggacagaggaacataaatttgctagtaatgggcatttg
catcaggaaatggaccatctgctgctgtctttaggggacatctctcatcatgctcctgtg
ctcttggcctgggctttacttcgtcatacagtaaccccagaggagtcaaccaatgcaatc
aggcgaatgggcagtactgccattcagctgaatgtattccagtacctgacgaagctgctc
cgatccctcagcagtggggggaagaattgtactgccagcacagcttgcatgtgtatttat
gggctgctttcctttgttctgacctcactggaactacataccttaggtaatcagcaggac
atcattgatgcagcctgcgaagttctagcagcttccagcattccacaactcttctggagg
acggagccaactgcaggtctcggtattatcctggacagtgtgtgcgggatgttcccccat
cttctgtctcctcttctgcagctgctcaaagcccttgtctcagataaatctactgcaaaa
aaggtgtacactttcctggataaaatgtccttctacatcgaattgtacaaacataagcct
cctgatgtgatctctcatgaagatggcaccctttggcgaagacaggtgccaaaacttctt
tatcccttggggctgggccagacaaacctacgaatacctcagggaacggtgggccaagtg
atgctggatgaccgggcgtacttagtacgatgggaatattcttatagcagctggacattg
ttcacctgtgaaattgagatgctactccatgttgtatcgacagcagatgtgattcagcac
tgccagagggtcaagccaatcattgatctggttcacaaagtcatcagcactgatgtgtca
atagcagattgtcttctgccaatcacgtcacggatctacatgctgctacagaggttaacg
actgtgatctctcccccagtggatgtaattgcttcttgtgtcaattgtttgactgtattg
gctgcccgcatgccagctaaggtttggactgaccttcaccacacagggttcttaccattt
gttgccaatccagtttccagtatgagtcatatgattagtgctgagggaatgaatgctgga
ggctatgggaatctgttgatgagtgtggaacagcctcagggcgagtatggtgtcaccatc
tccttcctacatttgattacaactcttgtccgtggacagttgggcagcacccagagccaa
gggctgatgccctgcattgtgtttgtgttgaaggaaatgttgccaaactaccacaaatgg
cgctataactcccatggtgtgagagaacgcattgggtgcctaattttgcagcttatccat
gctattctgaatctgtgccctgaaatggatcctcacagcagcagtgcccccagtctacag
tccttatgcattttcagcctggccaacacggaagcaggacaggctgtcattaacatcatg
ggcattggtgtggacaccattgatatggtaatggcctcacagtccagtagttgcattcac
tcattggagaatttcaagggaattgcccgcattgcagatttgtggaacgatgagtcactg
ggccagggccagctgctgatccagacagtaaagctggcattctccgtcactaataacgtc
atccggttgaagtccccttccagtgtggtatccccactagagcaggcacttactcaacat
ggtgctcatgggaacaatctgattgctgtattagccaaatatatctaccacaaacatgac
ccagctctgccacgccttgccatccagctgctcaaacgacttgctacggtggctccaatg
tctgtttatgcctgtcttgggagtgatgctgctgccattcgtgatgcctttttgacccgc
ctgcagagtaagattgaggacatgcgcattaaagttatgatcctggagttcctcactgtt
gctgtagagacacaacctgggcttattgagctcttcctgaacctggaagtgaaagatgga
aatgatgggtcaaaggaattcagcttaggggaatggagttgcctccaggtggtcttggaa
ctgacagattccaaacagcaggaaagatactggtgtcctcccctcttgcaccgagctgcc
attgcattccttcatgccctctggcaggaccgtcgggatagtgccatgctggtcctgagg
accaagccaaagttttgggagaacttaaccaaccctctctttgggacccttgctccccct
tcagaaacatcagagctcagtgtcttggacacttgtgccttaatcatgaaaatcatctgc
ctggagatctactatgtggtcaagggctcactggatcagtctctgaaagacaccctgaag
aagttctccacagaaaagcgctttgcttattggtcagggtatgtgaagtcattggcattg
catatggcagagacagagggtagcagctgcacctccctgacggagtatcagatgctgatc
tcagcctggcggatgctgctaattatctccactagtcacgcagatattatgcatctgact
gactctgcagtccggcaccaactgtttttggatgtgctaagtgggaccaaagctttgttg
ctggtccctatgtcagtgttgtgcctgcagttggggtccatgctgtgcacccttctgctg
atcctgcttagacagtggaagagcgagttgggttctgtggataaaatcataaactccttg
acgcagattctggagggagtactgcaggcagatcagcagatgatggagaagaccaaggcc
aaggtgttctctgctctcatcactgtcctgcacatgaaggagatgaaagtgagtgagatc
cctcagtactcccagctggtgatgagcgtgtgtgagaccctccaagatgaagtcattgtg
ctctttgatcagacacgacacagcctcacgtctggagattctgcagatgacaaggacagc
atggaaacagatgatgcctgccggggtaaacacaaggaccagcgagatggggtgtgtgtt
ctggggctgcatctggcaaaagaactctgtgaagtagatgaagatggagattattggctg
caggttactaggaaggtccccttgctgcctacgatcttcactgccctagaaatcagcctg
agggttaaacaaaaccttcacttcacagaggcttcattgcatctactgctgaccttagcc
aggacacaacagggtgcagcagctgttgctggtgcgggtgtcacacagagcatttgtttg
tccctcttgagtgtgtaccagctgagcacaaatggaacaattcagacacctgcttcttct
cgtaagtctctggatgccccatcctggcctggtgtctatcgtctctccatatcgttgatg
gagcgtcttcttaagactctcaggtacaacttcctgacagaggcactggattttgtgggt
gtccatcaggagaggattcttcagtgtttgaatgcagtacgcacagtacagagcctgtcc
tgtctggaagaagctgaccatactgttggcttcattcttcagctctccaactttatgagg
gagtggcatttccatcttccacagctcttgagggacatacaggtgaacttgtgttacctc
tgccaggcttgtacctccctcttgcatagccgcaaaatgcttcagcactacctacagacg
aaaaatggtgactccctcccatcaactgtgacacctcgaatgcaacgcaccccccatgcc
tcctccaagcacccaagccctgagtcagaggcagccgagcagaaggcgctgcgtacagtg
cagtacggcctcttgagaattctcagcaagtctctcgctgccctacgccacttcacccct
gatgtctgccagatcctcctcgatcagtccttggacctggctgagtacaaccttctcttt
gttttgaatttcaccacacctgccttcgactcagaggtccctccctgctttgggaccctc
ctggccacagtcaatgtggcccttaatatgctgggagagctggataagaagaaagagccc
tttgctcaagctgcagggctgaatactcaagaggagactaaaactcttaagtctttactc
atgtttacaatggaaaactgtttctacctactcatctcccaggctgttcggtatttgagg
gacccagcagtgcatccacgagacaagcagcggatgaagcaagaactcagctcagagctg
agtacactgctctcaagcctatctcgctacttccgccggggcggcccctcttctccagcc
agtggggttctcccctcaccccagggaaagtccacctccaagatgggccctgaggggcag
gagcctttgatccagctcgtacaagcctttgtcagacatgtgcagagatag
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integrated database retrieval system
