Carettochelys insculpta (pitted-shelled turtle): 142024185
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Entry
142024185 CDS
T11194
Symbol
DHX16
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142024185 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ciz03041
]
142024185 (DHX16)
Enzymes [BR:
ciz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142024185 (DHX16)
Spliceosome [BR:
ciz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
142024185 (DHX16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
Cas3-like_C_2
AAA_19
AAA_30
nSTAND3
SecA_DEAD
SCO1-SenC
Motif
Other DBs
NCBI-GeneID:
142024185
NCBI-ProteinID:
XP_074872017
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All DBs
Position
22:complement(9731822..9744387)
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AA seq
1051 aa
AA seq
DB search
MAALERWVSGELHALLGLSERHVVGFLVGLARRSRSPDELLSRLEETETLRVSEPAVRAF
ARRLWEQIPRPAPQERPARVAEREALALQQKNRSYQLLEDSEEEEEGGDGGAAPGSKRRP
EGRKYKKRRKHLRRKQETASEEEEENEAERQLEPAPSREGPDSEDEWDRSERERLQDLEE
RDAFAERVKRKDRERTRNILERSDKKAYEEAQKRLKMAEEDQKTMVPELRKKSRREYLAK
REQDKLEDLEAEILDEELLFSGLELTAVERRELEYKQRVRDLAKDYKQAGEQERLEKSNR
YYMPEESRGKKIPERYEEPAAAEGRATPREEQRRWEEEHIGAAALRFGARDAAQRHPRKD
YDYVLEEEEMVHFVSAVQMQGTAQAQEEKPELSEAARRRMSMQEVRRSLPVYPYRQDLLA
AIGEHQILIIEGETGSGKTTQIPQYLYEEGYTDKGMKIGCTQPRRVAAMSVAARVSQEMG
VKLGNEVGYSIRFEDCTSERTRVKYMTDGMLLREFLTEPDLASYSVIMIDEAHERTLHTD
ILFGLIKDIARFRPALKVLIASATLDTERFSTFFDEAPVFRIPGRRFPVDIYYTKAPEAD
YLEACVVSVLQIHVTQPRGDVLVFLTGQEEIEACCEMLQERCRRLGSKIPELLVLPIYAN
LPSDMQAKIFEPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLI
VTPCSRASANQRAGRAGRVAAGKCFRLYTAWAYKNEMEETTVPEIQRTNLGNVVLLLKSL
GINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRKMAELPVDPMLSKMILA
SEQYKCSEQILSIAAMLSVNNSIFYRPKDKVVHADNARMNFFLPGGDHLVLLNVYNQWVE
SGFSMQWCYENFIQFRSMRRARDVREQLEGLMERIEVDLTSSEGDYAPIRKAITAGFFYH
TARLTRTGYKTVKHQQTVFIHPNSCLFEEQPRWLIYHELVFTTKEFMRQVTEIDSMWLLE
VAPHYYKAKELEDAAAKKLPKKVGKTREELR
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctggagcgctgggtgtccggggagctgcacgcgctgctggggctgagcgag
cggcacgtggtcggcttcctggtcggcctggcccggcgcagccgcagtcccgacgagctg
ctcagccgcctggaggagacggagacgctgcgcgtgagcgagccggccgtgcgcgccttc
gcgcggcgcctctgggagcagatcccacgtccggccccgcaggagcgtccggcccgggtg
gccgagcgcgaggccctggccctgcagcagaagaaccgctcctaccagctgctggaggac
agcgaggaggaggaggagggaggggatgggggtgctgccccaggctccaagcgccgcccc
gaggggaggaagtacaagaaacggcgcaaacacctgcgccggaagcaggagacggcgtcc
gaggaggaggaggagaacgaggcggagaggcagctggagccagccccgtcccgggagggg
ccggactcggaggacgaatgggaccgcagcgagcgggagcggctgcaggacctggaggag
cgcgacgccttcgctgaacgggtcaagcgcaaggacagggagcggaccaggaacatcctg
gagcggtcggataagaaggcctacgaagaggcgcagaagcgactgaagatggcggaagag
gaccagaaaaccatggtcccggagctgcggaagaagtcgcgccgggagtacctggccaag
cgggagcaggacaagctggaggacctggaggcagagatcctggacgaggagcttctgttc
tcggggctggagctgacggcggtcgagcggcgggagctggagtacaagcagcgggtgcgc
gacctggccaaggactacaagcaggcgggcgagcaggagaggctggagaagagcaaccgc
tactacatgcccgaggagagccggggcaagaagatccccgagcgctacgaggagccggcg
gcggcggagggacgggccacaccgcgggaggagcagcggcgctgggaggaggagcacatc
ggggcggccgccctgcgcttcggggcccgcgacgctgcccagcgccacccccgcaaggac
tacgactatgtgctggaggaggaggagatggttcacttcgtcagcgccgtgcagatgcag
ggcacggcccaggcccaggaggagaagccggagctgtccgaggcggcgcggcggagaatg
tccatgcaggaggtgcggcgcagcctgcccgtctacccctaccgccaggacctgctggcg
gccatcggcgagcaccagatcctcattatcgagggggagacgggttccgggaagaccacg
cagatcccccagtacttgtacgaggagggctacacggacaaggggatgaagatcggctgc
acccaacccaggcgagtggcggccatgagcgtcgcagccagagtctcccaggaaatggga
gtgaagctcggtaacgaggtgggttacagcatccgctttgaggactgcacctcggagcgc
acgcgggtgaagtacatgacggacggcatgctgctgcgagagtttctcaccgagcccgac
ctcgccagctacagcgtgatcatgatcgacgaggcccacgagcgcaccctgcacaccgac
atcctcttcgggctgatcaaggacatcgcccgcttccggccggcgctcaaggtgctgatc
gccagcgccaccctggacaccgagcgcttctccaccttcttcgacgaggcgcccgtcttc
cgcatccccgggcgccgcttccccgtcgacatctactacaccaaggcccccgaggccgac
tacctggaggcctgcgtcgtgtcggtgctgcagatccacgtcacccagccgcgcggcgac
gtcctggtcttcctcaccggccaggaggagatcgaggcctgctgcgagatgctgcaggaa
cgctgccgccgcctgggctccaagatccccgagctgctggtgctgcccatctacgccaac
ctgccctccgacatgcaggccaagatcttcgagcccaccccgcccggagcccggaaggtc
gtcgtggcgactaacatcgccgagacttccttgacgatcgacgggatcatctacgtcatt
gacccggggttctgcaagcagaagagctacaacgctcgcaccggcatggagtcgctgatc
gtcacgccctgctcccgggcctccgccaaccagcgggcaggccgggccgggcgcgtggct
gccgggaagtgcttccgcctctacacagcctgggcctacaagaatgagatggaagagacc
acggtgcctgagatccagaggaccaacctgggcaacgtggtgctgctgctgaaaagtttg
ggcatcaacgacctcatccacttcgacttcatggacccgcccccgcacgagaccctggtg
ctggccctggagcagctgtacgccctgggggcgctcaaccacctcggggagctcaccaag
ctgggccggaagatggcagagctgccggtggaccccatgttgtccaagatgatcctggct
tccgagcagtacaagtgctctgagcagatcctctccatcgcggccatgctgtccgtcaac
aactccatcttctaccggcccaaggacaaggtggtgcacgccgacaacgcccgcatgaac
ttcttcctgcccggcggggaccacctggtgctgctcaacgtctacaaccagtgggtggag
agcggtttctccatgcagtggtgctacgagaacttcatccagttccgctccatgagacgg
gcccgggacgtgagggagcagctggaggggctgatggagcgcatcgaggtggacctcacc
tccagcgagggggactacgctcccatccgcaaggccatcaccgccggcttcttctaccac
acggcccgcctgacccgcaccggctacaagacggtcaagcaccagcagacggtcttcatc
caccccaacagctgcctcttcgaggagcagccccgctggctcatctaccacgagctggtc
ttcaccaccaaggagttcatgagacaggtcacagagatcgacagcatgtggctgctggag
gtggcccctcactactacaaggcgaaggagctggaggacgcggcggccaagaagctgccc
aagaaagtgggcaagacccgggaggagctgcgctag
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