Carettochelys insculpta (pitted-shelled turtle): 142025111
Help
Entry
142025111 CDS
T11194
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
142025111 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142025111 (SKIC2)
Enzymes [BR:
ciz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142025111 (SKIC2)
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
142025111 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
142025111 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
DUF2695
Motif
Other DBs
NCBI-GeneID:
142025111
NCBI-ProteinID:
XP_074873716
LinkDB
All DBs
Position
22:complement(10588923..10602116)
Genome browser
AA seq
1258 aa
AA seq
DB search
MERMVLPPRGPLELPLSLLEVGCAGRFELLTRPEGPGGDTLPLCTLPHGLPPFAMDLASE
LEQRFLASPEWLPIHHFERAHRGWPREKAVWSLLEVDATPVHSTLQTERDPTTGQILGFR
EALLDNVGLSAKNSLSFQRAPGPPAQALRGSSTNYPFWPGGMDEPSLEQIGTREQLEEEV
DFEKELLTVPPGWKKGVEFKAQGAALQGPSGRLPLGGLLGALDSFQLGDSSDEEQEKKKK
TKGQEKERPPAPTPALQRADSLEELVLKDVASEPPPPAQPVPPEPPQEQWAIPVDISSPV
DDFYKRIPDPAFRWPFELDVFQKQAILHLERRDSLFVAAHTSAGKTVVAEYAIALAQKHM
TRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPDASCLIMTTEILRSMLYNGSDV
IRDLEWVIFDEVHYVNDAERGVVWEEVLIMLPEHVNIILLSATVPNTLEFAAWVGRIKRK
QLYVISTARRPVPLEHHLYTGTSHKSQHELFLLVDARGGFLSKGYYAAVEAKKERTSKHA
QTFGAKQPTQAGAGPGQEKGVWLSLIDTLRKRDQLPVVAFTFSRARCDDNAAALTTVDLT
SSAEKSEVHVFFQKCISRLKGSDRQLPQVLHMVELLKRGIGVHHSGILPILKEVVEMLFS
KGLVKILFATETFAMGVNMPARTVVFDSIRKHDGTGFRDLLPGEYIQMAGRAGRRGLDTT
GMVIVLCKTQVPEMADLHRMMLGRPTQLQSQFRLTYTMILNLLRVEALRVEDMMKRSFCE
FHSRKDSQAHELAIAQLSRRLAAMEEVDTGGQLSDLPEYCQAVQDLQETRRLIQRRVAES
ASGLKALAPGRVVIVQTPVHRNALGVILQVSPDAANRTFTTLVLCEKAPEEGTPGGHTDR
GSPSPEVPFPDDLLLNKLFLPEGPCGHVVEQLGPCDIAVLTGRTLRVNAERILEDVRKRQ
MPRFRHDPPGPSAVQAAQELLRLAEGGARGLPRLDPVGALQLKELEVVEAVVRLRRLEEM
LPSFQCVHSPRFAPQYLRLAERLRLRVELEHRRFLLSDQSLLLLPEYQQRVEVLRALGYV
DAGGAVQLAGRVACEISNHELLLTELVFDNLLTELRPEESVALLSCLVCQGKGPSEPQLP
SVLRQGMERIRAVAERVALLQRDCGLRESVEDFVAQYNFGLVEVVYEWARGMPFAELARL
TETQEGIVVRCIQRLEETCRDVRNAARIIGEPTLYAKMEQASSLIKRDIVFAASLYTQ
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggagagaatggtgctgcccccccgggggcccctggagctgccgctgtccctgctggaa
gtgggctgcgctgggcgctttgagctcctcacccgccccgaggggcccggtggggacacg
ctgcctctctgcacgctgccccacggcctgccccccttcgccatggacctggcctccgag
ctggagcagcgcttcctggccagccccgagtggctgcccatccaccactttgagagggcc
cacaggggctggccccgggagaaggccgtgtggtcgctgctggaggtggacgccacccct
gtgcactccacgctgcagacggagcgggaccccaccacggggcagatcctgggcttcaga
gaggcgctgctggacaacgtggggctgtcggccaagaactcgctctccttccagcgcgcg
ccggggccccctgcccaggccctgcggggcagcagcaccaactaccccttctggccaggt
gggatggacgagcccagcttagagcagatcggcaccagagagcagctggaagaggaggtc
gacttcgagaaagagctgctgacggtgcccccgggctggaagaagggggtggagttcaaa
gcgcaaggggcggccctgcagggcccatcgggacggctgcccctgggcgggctgctgggg
gcgctggactccttccagctcggcgactccagcgacgaagagcaggagaagaagaagaag
acaaaggggcaggagaaggagaggcccccggcccccacccctgccctgcagagggcagac
agcctggaggagctggtgctcaaggatgtggcctctgagccccctccgcccgcccagccc
gtgccccccgagcccccccaggagcagtgggcgattcctgtggatatctcctcacccgtg
gacgacttctacaaacgcattcctgacccggccttccggtggcccttcgagctggacgtg
ttccagaaacaggccatcctgcacctggagcgccgcgactcgctcttcgtagccgcgcac
acctcggccggcaagacggtggtagccgagtacgccattgccctggcccagaagcacatg
accaggaccatctacacctcccccatcaaggctctgtccaaccagaagttccgagacttc
aggaacacctttggggacgtggggctgctcacgggggacgtccagctgcaccccgatgcc
tcctgcctcatcatgaccactgagatcctgcggtcgatgctgtacaatggttcggacgtg
atccgggacctggagtgggtgatctttgacgaggttcattacgtcaacgacgccgagcgc
ggggtggtgtgggaggaggtgctgatcatgctgccggagcacgtgaacatcattctgctg
agcgccaccgtgcccaacacgctggagttcgccgcctgggtggggcggatcaagcggaag
cagctgtacgtgatcagcacggcccggcgcccggtgcccctggagcaccacctgtacacg
ggcaccagccacaagtcccagcacgagctcttcctgctggtggacgcccgcggcggcttc
ctctccaaggggtactacgcggcggtggaggccaagaaggagcgaaccagcaaacacgcc
cagaccttcggggccaagcagcccacgcaggcgggggccgggccgggccaggagaagggg
gtgtggctgtcgctcatcgacacgctgcggaagcgggaccagctgccggtcgtggccttc
accttctcccgcgcccggtgcgacgacaacgccgccgccctcaccaccgtggacctgacc
agcagcgccgagaagagcgaggtgcacgtcttcttccagaagtgcatctcccgcctcaag
ggctccgaccgccagctgccccaggtgctgcacatggtggagctgctgaagcgcggcatc
ggggtgcaccacagcggcatcctgcccatcctcaaggaggtggtggaaatgctcttcagc
aaggggctggtcaagatcctgtttgccacggagacctttgccatgggggtgaacatgccg
gcccgcaccgtggttttcgactccatccgcaagcacgacggcaccggcttccgtgacctg
ctgccaggcgagtacatccagatggcaggccgggccgggcgccgggggctggacaccacc
gggatggtcattgtgctctgcaagacccaggtgcccgagatggccgacctgcaccgcatg
atgctggggaggccgacgcagctgcagtcccagttccgcctgacgtacaccatgatcctg
aacctgctgcgggtggaggctctgcgcgtggaggacatgatgaaacgcagcttctgcgag
ttccacagccgcaaggacagccaggcccacgagctggccatcgcccagctcagccgccgg
ctggccgccatggaggaggtggacacgggggggcagctcagtgacctgcccgagtactgc
caggccgtgcaggacctgcaggaaacacgtcgtctcattcagcggcgggtggcggagtcg
gccagcggactgaaggctctggcgcccggccgcgtggtgatcgtccagaccccggtgcac
cgcaatgccctgggggtgatcctacaggtctcccccgacgcagccaaccggaccttcacc
accctggtgctttgcgagaaggcccccgaggaggggaccccgggtgggcacacagacagg
ggcagccccagcccagaggtgcccttccccgacgacctgctgctcaacaagctcttcctg
cctgaagggccctgcggtcacgtggtggagcagctggggccgtgcgacatcgcggtgctg
acgggccggacactgcgggtcaatgccgagcgcatcctggaggatgtccggaagcggcag
atgccgcggttcaggcacgacccccccgggccctcggccgtgcaggcggcgcaggagctg
ctgcggctggcggaggggggcgccagggggctgccccgcctggacccggtgggcgcgctg
cagctgaaggagctggaggtggtggaggctgtcgtgcggctgcggcgcctggaggagatg
ctgcccagcttccagtgtgtgcacagcccccgcttcgccccccagtacctgcgactggcc
gagcggctgcggctgcgggtggagctggagcacagacggttcctgctatcggaccaatcc
ctgctgctgctgccggagtaccagcagcgggtcgaggtgctgcgggcgctgggctacgtg
gacgccgggggcgcggtgcagctggccgggcgcgtggcctgcgagatcagcaaccacgag
ctgctgctgacggagctggtgttcgacaacctgctgacggagctgcggccggaggagagc
gtggccctgctcagctgcctggtgtgccagggcaagggccccagcgagccccagctgccc
agcgtgctgcgccagggcatggagcggatccgggcggtggccgagcgcgtcgccctgctg
cagcgggactgcggcctgcgcgagtcggtggaggacttcgtggcgcagtacaacttcggc
ctggtggaggtggtgtacgagtgggcccgtggcatgcccttcgccgagctggcccggctg
acggagacgcaggaggggatcgtggtgcgctgcatccagcggctggaggagacctgccgg
gacgtgcgcaatgcggcccgcatcatcggcgagcccacgctctacgccaagatggagcag
gcctccagcctcatcaagagggacatcgtcttcgccgccagcctctacacccagtga
DBGET
integrated database retrieval system
