Carettochelys insculpta (pitted-shelled turtle): 142025123
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Entry
142025123 CDS
T11194
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ciz Carettochelys insculpta (pitted-shelled turtle)
Pathway
ciz03013
Nucleocytoplasmic transport
ciz03015
mRNA surveillance pathway
ciz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ciz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142025123 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
142025123 (DDX39B)
03015 mRNA surveillance pathway
142025123 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciz03019
]
142025123 (DDX39B)
03041 Spliceosome [BR:
ciz03041
]
142025123 (DDX39B)
Enzymes [BR:
ciz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142025123 (DDX39B)
Messenger RNA biogenesis [BR:
ciz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142025123 (DDX39B)
Spliceosome [BR:
ciz03041
]
Complex C
Other components
EJC/TREX
142025123 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142025123 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
142025123
NCBI-ProteinID:
XP_074873749
LinkDB
All DBs
Position
22:complement(10563371..10569509)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENQAAGDGVDVPPKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaacgacgtggataacgagctgctggattacgaggacgatgaggtggagaac
caggcggctggcgatggggtggacgtgccccccaagaaggacgtcaagggctcctacgtc
tccatccacagctccggcttccgggacttcctgctcaaaccggagctcctccgcgccatc
gtggactgcggctttgagcacccctcggaagtgcagcacgagtgcatcccgcaggccatc
ctgggcatggacgtgctgtgccaggccaagtcgggcatgggcaagacggccgtcttcgtg
ctggccacgctgcagcagctggagcccgtcaccggccaggtgtcggtgctggtgatgtgt
cacacacgggagctggcgttccagatcagcaaggagtacgagcgcttctccaagtacatg
cccagcgtgaaggtggcggtgttcttcgggggcctgtcgatcaagaaggacgaggaggtg
ctgaagaagaattgcccccacatcgtggtggggaccccggggcgcatcctggccctggcg
cgcaacaagagcctcaacctcaaacacatcaagcacttcatcctggacgagtgcgacaag
atgctggagcagctcgatatgcgccgggacgtccaggagatcttccgcatgaccccgcac
gaaaagcaggtcatgatgtttagcgccactctgagcaaggaaatccgccccgtgtgccgc
aaattcatgcaagaccccatggagatcttcgtggatgacgagaccaagctgacgctgcac
ggcctgcagcagtactacgtcaagctgaaggacaacgagaagaaccggaagctcttcgac
ctgctcgacgtgctggagttcaaccaggtggtgatctttgtgaagtcggtgcagcggtgc
attgcgctggcccagctgctggtggagcagaacttcccggccatcgccatccaccggggc
atgccccaggaggagaggctgtcccgctaccagcagttcaaggatttccagcgccgcatc
ctggtggccaccaacctctttgggcgggggatggacattgagcgcgtgaacatcgccttc
aattacgacatgcccgaggactccgacacctacctgcaccgggtggcacgcgctgggcgc
ttcggcaccaagggcctggccatcaccttcgtgtcggacgagaacgacgccaagatcctg
aacgacgtgcaggatcgcttcgaggtgaacatcagcgagctgcccgacgagatcgacatc
tcttcctacattgaacagacccgataa
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