Cellvibrio japonicus: CJA_1667
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Entry
CJA_1667 CDS
T00721
Name
(GenBank) ribonuclease, Rne/Rng family protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cja
Cellvibrio japonicus
Pathway
cja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJA_1667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cja03019
]
CJA_1667
03009 Ribosome biogenesis [BR:
cja03009
]
CJA_1667
Enzymes [BR:
cja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CJA_1667
Messenger RNA biogenesis [BR:
cja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CJA_1667
Ribosome biogenesis [BR:
cja03009
]
Prokaryotic type
rRNA processing factors
CJA_1667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACE85274
UniProt:
B3PEU2
LinkDB
All DBs
Position
complement(1926954..1929797)
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AA seq
947 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRSREQKKSNIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFSRNPGDNNDGRIKIKDVLKEGTEVIVQIDKEERGNKGAALTT
FISLAGRYLVLMPNNPRAGGISRRIEGEDRAELKDALGEIEVPQGMGVIIRTAGVGRSAE
ELQWDLNYLLQLWESIENAAKRSPAPEFLFQESNVIIRAIRDYLRQDVGEVIVDNKEAFD
LAAGFIQQVMPNYRSKVKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDVTEAL
VAIDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQREV
ENRMRDALMMDRARVQIGRISRFGLLEMSRQRLRPSLGETHSKICPRCEGVGTIRSTRSL
ALSILRLVEDEAQKDRSAEIRAICPVSVATYLLNEKRKTISSIEARNNTRVVIVPSAELM
TPHFEVQRLRDDDEGTLETSYKIVPHVDEHKEEEEDATVKVGNVPKPLVQLTAPSQPAPE
PAKKPGLLDRILKGIGNLFARDEDDKKKSKRDNKRDNRRNSSRNRRDNRRRDRKEDREIR
DNLEHRANDNKVKEQEPEQRNNRQQRDPQQGAEERGNRRQRTPREERSNREDRSNREDRR
NERPSREEPNIREEKDNLRQVQHLADDASEQDILAEQDQDENGEQRPSRRPAGRRSRGQQ
RRRGRRDAVNGENTAETTEESTAVIAAESPKPLSEAAELARQISAAIAEHEQQQAATSQW
AVETTHVTATESPAKVEAYDNFGATQQIETEAYVAEPEVPAKETAHKEDEQAITEAENTF
VTESIISATEPVVADTQADHSDSDLILAAVPSSEPEPVTTAGRAINDPRLSPKPIGQITI
VTETPEQKHLQALDTSLPPNVEHNPRPLNRPLNDPRLAQRKSEEQAS
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcattaatgcaactcaaccggaagagttgcgtgtagccctggtcgat
ggtcagtggctgtatgatttggatatcgaaaatcgcagtcgcgaacaaaaaaaatcgaat
atctacaaaggcaaaatcacccgcgtagaacccagcctggaggcggcttttgttgattat
ggtgcagagcgccatggtttcctccctctcaaagaaatttcccgcgagtatttcagcaga
aaccccggtgacaataacgatggtcgtatcaagatcaaagatgtcctgaaggaaggcact
gaggttattgttcaaattgataaagaagagcgaggcaataaaggtgcagcgctaacaacc
tttatcagcctggccggccgctacctggttcttatgccaaataatccacgcgctggtggt
atttcacgccgtatcgaaggtgaagatcgcgccgaattaaaagatgccctgggagagatt
gaagttcctcaaggcatgggagtcattattcgcaccgcgggtgttggtcgcagcgctgaa
gaactgcagtgggatctgaattatctgctgcagctctgggaatccattgaaaatgcagcc
aaacgctcccctgctcccgaattcctgttccaggaaagcaatgtaattattcgcgctatc
cgcgactacctgcgccaggatgttggtgaggtcatcgttgacaataaagaggctttcgac
ctggcggcagggtttattcagcaggttatgcccaactatcgcagcaaagtaaagctgtac
caggatgatatccccctatttaatcgctaccagattgaatcccagattgagacggctttc
cagcgtgaagtcaaattgccatctggcggatcaatcgtcattgacgtcactgaagccctg
gttgccatagacatcaactcctcgcgcgccaccaagggcggcgatattgaggaaacggcg
ctacaaaccaatctcgaagcagccgatgaaatagcccgccaattgcgcttgcgcgacatg
ggcggcctggtagttatcgattttatcgacatgcaacccgtgcgcaatcaacgtgaagtg
gaaaaccgcatgcgcgatgcactgatgatggatcgtgcacgagtacaaattggcaggatc
tcccgctttggcttactagaaatgtctcgccagcgcttacgtccatcgctgggggagacc
cattccaagatctgccctcgctgtgaaggtgtaggtactattcgcagtacacgttcactg
gccttgtccattttgcgactggttgaagatgaggcacagaaagaccgcagtgcagaaata
cgcgccatatgccctgtatctgtagcgacttacctgcttaacgaaaaacgcaaaaccatc
tccagtattgaagcacgcaacaatacccgtgtagtgattgtccccagtgccgagctgatg
acccctcactttgaggtacagcgcctccgcgatgatgacgaaggcacccttgaaaccagt
tataaaattgtcccgcatgtagatgaacataaagaagaggaagaggatgccaccgttaag
gtaggtaatgtgccaaaacccctggtacagctcaccgcccccagtcaacctgcaccggag
cccgccaaaaaaccagggttgcttgacagaatcctgaaaggcattggcaatttgtttgcc
cgcgatgaagatgacaagaaaaaatccaaacgcgacaacaagcgcgacaatcgccgcaac
tcatcgcgcaaccgccgtgataaccgccgtcgcgaccgcaaggaagatcgagaaatacgc
gacaacctggagcatcgtgccaacgacaacaaagtcaaagagcaagaacctgaacagcgc
aacaatcgccagcagcgcgatccccaacaaggtgcagaagaaagaggtaatcgtcgtcaa
cggacaccccgtgaagaacgttccaatcgtgaggatcgttccaaccgcgaagaccgtcgc
aacgaacgtccctcacgcgaagaacccaatattcgcgaagaaaaggacaacttacgccaa
gttcagcatttagccgacgacgcgagtgagcaagatatccttgcagaacaagatcaggat
gaaaatggtgaacaacgtccctctcgccgccccgctggccgcagatcgcgcggacagcaa
cgccgccgcggccgccgcgatgcagtgaatggagaaaatactgcagaaacaaccgaagaa
agtacggcggttatagcggctgagtcacccaagccactgagtgaagccgccgagttagcc
cgtcaaatttctgcagctatcgcagaacacgagcagcaacaagcggcaaccagtcagtgg
gcagtagaaacaactcacgtaactgcaacagaatcccctgcgaaagtagaggcctacgat
aacttcggtgccacacagcagatcgaaaccgaagcctatgttgctgagcccgaagtaccg
gccaaagaaactgctcacaaagaagatgagcaagcgataacagaggcagaaaatactttt
gtcactgaatcaatcattagcgctactgaaccagttgttgcagatacacaagctgatcac
agtgacagtgacctgattctcgctgctgtgccatccagcgaacctgaacccgtgacaacc
gctggacgagctattaatgatccgcggctttcacctaaacccatagggcaaataactatt
gtgactgagacgcccgagcaaaaacatctgcaagctctggacaccagcctgcccccaaac
gttgaacacaatccgcggccattaaaccgcccactaaatgatccgcgattggcacagcga
aaatcagaagagcaagcatcataa
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