Cellvibrio japonicus: CJA_1979
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Entry
CJA_1979 CDS
T00721
Symbol
deaD-1
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cja
Cellvibrio japonicus
Pathway
cja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJA_1979 (deaD-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cja03019
]
CJA_1979 (deaD-1)
03009 Ribosome biogenesis [BR:
cja03009
]
CJA_1979 (deaD-1)
Enzymes [BR:
cja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJA_1979 (deaD-1)
Messenger RNA biogenesis [BR:
cja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJA_1979 (deaD-1)
Ribosome biogenesis [BR:
cja03009
]
Prokaryotic type
rRNA helicases
CJA_1979 (deaD-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
TA0956
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ACE85649
UniProt:
B3PHH9
LinkDB
All DBs
Position
2292809..2294686
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AA seq
625 aa
AA seq
DB search
MVLAPARIVTRVFIAVIKTHTGQYMSEPILFADLALSAPVLKAIQAVGYEVPSPIQAAAI
PILLDGGDILGMAQTGTGKTAAFALPLLSKLDLSQNEPQILVLAPTRELAIQVAEAFQKY
AADMPGFHVLPIYGGQDMTSQLRQLKRGVHVVVGTPGRVMDHLRRGSLNLNNLKSLVLDE
ADEMLRMGFIDDVEWILEHTPETRQTALFSATMPREIRKVADNYLRDAKEIKIASTQQTG
DNIEQVYWMVSGTNKLDALTRILEVEPFDGMIIFVRTKTATVELAEKLEARGYSAAPLNG
DMNQQLRERTIERLKTSKLDIVIATDVAARGIDVERVSHVVNYDIPYDSEAYVHRIGRTG
RAGRSGKAILFVAPREKRLLYTIEKATRKPITLMELPSGATVTKHRIDQFTQQITDVLTE
QSDLSFFNDLLAEYGRTNDVSPEQIASALAYLVQKERPLQVKFTDVKPERNDRSERRERG
ERDERRGSREDRPRRDRSDENMERYRIEVGRNHDARPGDIVGAIANEAGIESRFIGHIKL
FDEFSTVDLPAGMPKEVLQHLKKVRVRNRPLEISLDQGGSRGGYRDNSDKPRFKERDFGG
RDKPRFKDRDNSGSGKPGPRSRKFD
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
ttggtgcttgcacctgccaggattgtgactagggtttttatagctgttatcaagacacac
acaggtcaatacatgtctgaacctattttatttgctgacttagccctttctgcccctgta
ttaaaagccattcaggctgtgggttatgaggtcccctcaccgatccaggcagctgccatc
cccatcctgctggacggtggcgatattctgggtatggcgcaaaccggcaccggaaaaacc
gccgcttttgccttgccgctactgtccaaactggacttgagccaaaacgaaccgcagatt
ctggtgctggcgccaacgcgtgaattggcgatccaggtcgctgaagccttccagaaatac
gctgccgacatgcccggtttccacgtcctgcccatttatggtggccaggatatgaccagc
caattacgccaactcaagcgcggtgtacacgtggtggtcggtacgccaggccgtgttatg
gatcacctgcgccgcggcagcctcaacctgaacaacctcaagagcctggtgcttgatgag
gccgatgaaatgctgcgcatgggttttatcgatgatgtcgaatggattctggaacacacc
ccggaaactcgccagacagccctcttttctgccaccatgccgcgtgaaattcgcaaggtt
gccgacaattacctgcgcgatgccaaagaaatcaagattgccagcacccagcaaaccggt
gacaacatcgagcaggtgtactggatggtgagcggcaccaataaactggatgccctgaca
cgtatcctcgaggtggaacctttcgatggcatgattatttttgtgcgcacaaaaactgcc
actgttgagctcgccgaaaaattggaagcacgtggttactctgcagcaccactcaacggc
gacatgaaccaacagttgcgcgagcgcacgattgagcgtttaaaaaccagcaaactcgat
attgttattgctaccgatgtggcggcacgcggcatcgacgtggaacgcgtcagccatgta
gtgaattacgatattccctacgacagtgaagcttatgtacaccgtattggccgcaccggt
cgtgcaggccgtagcggtaaggcaattctgtttgtggcaccgcgcgaaaaacgcctgctt
tataccatcgaaaaagcaacacgcaaacccatcacactgatggagttgcccagtggcgcg
accgtaaccaagcaccgtatcgatcaattcacccaacaaattaccgatgtgctgactgaa
cagtccgacctcagcttctttaatgatttgttggccgaatacggacgcaccaacgatgta
tcacccgagcaaattgcatcggcattggcctacctggtacaaaaagagcgtccgctgcaa
gtcaaatttaccgacgtaaaacccgagcgtaatgaccgcagcgagcgccgtgaacgcggt
gagcgcgatgaacgtcgcggcagccgtgaagaccgtccgcgccgcgaccgctccgatgaa
aatatggagcgctaccggattgaagtgggccgcaatcacgacgcgcgccccggtgacatt
gtaggtgcaattgccaacgaagccggtatcgaaagccgctttatcggccatatcaaactg
ttcgatgaattctctaccgttgatttgcctgcgggcatgccgaaggaagtgctgcaacac
ttgaaaaaagtgcgtgtacgcaatcgcccgctggaaatcagccttgatcagggcggctca
cgtggaggttatcgcgataatagcgataagccgcgctttaaggagcgcgattttggcggt
cgtgacaagcctcgctttaaggacagagataactcaggcagtggcaaacccggccctcgc
tcacgcaagtttgattaa
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