KEGG   Cellvibrio japonicus: CJA_3079
Entry
CJA_3079          CDS       T00721                                 
Symbol
hfq
Name
(GenBank) Hfq protein
  KO
K03666  host factor-I protein
Organism
cja  Cellvibrio japonicus
Pathway
cja02024  Quorum sensing
cja03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CJA_3079 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CJA_3079 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cja03019]
    CJA_3079 (hfq)
   03036 Chromosome and associated proteins [BR:cja03036]
    CJA_3079 (hfq)
Messenger RNA biogenesis [BR:cja03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CJA_3079 (hfq)
Chromosome and associated proteins [BR:cja03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CJA_3079 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: ACE86363
UniProt: B3PDC1
LinkDB
Position
complement(3658955..3659221)
AA seq 88 aa
MSKGHSLQDPYLNVLRKERVPVSIYLVNGIKLQGQVESFDQFVVLLKNTVSQMVYKHAIS
TVVPSRAVRVPLLNEAGGAEGEEDEQAE
NT seq 267 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcatagtttacaagacccttacctgaacgttctgcgcaaagagcgtgtg
cctgtatcgatttacctggtaaacggtatcaagttacaaggccaggttgagtcctttgac
cagttcgttgtactgctcaaaaacacagtaagccaaatggtttacaaacatgctatctct
accgttgtcccgtctcgtgctgttcgtgttcctttgctgaatgaagcgggcggtgctgaa
ggcgaagaagacgagcaagccgagtaa

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