Cellvibrio japonicus: CJA_3079
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Entry
CJA_3079 CDS
T00721
Symbol
hfq
Name
(GenBank) Hfq protein
KO
K03666
host factor-I protein
Organism
cja
Cellvibrio japonicus
Pathway
cja02024
Quorum sensing
cja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJA_3079 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
CJA_3079 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cja03019
]
CJA_3079 (hfq)
03036 Chromosome and associated proteins [BR:
cja03036
]
CJA_3079 (hfq)
Messenger RNA biogenesis [BR:
cja03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
CJA_3079 (hfq)
Chromosome and associated proteins [BR:
cja03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
CJA_3079 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
ACE86363
UniProt:
B3PDC1
LinkDB
All DBs
Position
complement(3658955..3659221)
Genome browser
AA seq
88 aa
AA seq
DB search
MSKGHSLQDPYLNVLRKERVPVSIYLVNGIKLQGQVESFDQFVVLLKNTVSQMVYKHAIS
TVVPSRAVRVPLLNEAGGAEGEEDEQAE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagggcatagtttacaagacccttacctgaacgttctgcgcaaagagcgtgtg
cctgtatcgatttacctggtaaacggtatcaagttacaaggccaggttgagtcctttgac
cagttcgttgtactgctcaaaaacacagtaagccaaatggtttacaaacatgctatctct
accgttgtcccgtctcgtgctgttcgtgttcctttgctgaatgaagcgggcggtgctgaa
ggcgaagaagacgagcaagccgagtaa
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