Caldichromatium japonicum: GWK36_01200
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Entry
GWK36_01200 CDS
T07151
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cjap
Caldichromatium japonicum
Pathway
cjap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GWK36_01200 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjap03019
]
GWK36_01200 (rnr)
03016 Transfer RNA biogenesis [BR:
cjap03016
]
GWK36_01200 (rnr)
Enzymes [BR:
cjap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GWK36_01200 (rnr)
Messenger RNA biogenesis [BR:
cjap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GWK36_01200 (rnr)
Transfer RNA biogenesis [BR:
cjap03016
]
Prokaryotic type
tRNA degradation factors
GWK36_01200 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Casc1_C
OB_Dis3
PAH
Motif
Other DBs
NCBI-ProteinID:
QIK36840
UniProt:
A0A6G7VAA5
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All DBs
Position
258351..260675
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AA seq
774 aa
AA seq
DB search
MSRRQPTQTAALVDPYREREAKKYAHPIPSREFILDTLNQRGPLSFENLAKCLALAEEYE
LVALERRLTAMVRDGQLVRNRAQAYCPVNKRDLIAGRVIGHPDGFGFVRPDEGGDDLYLY
PKEMRPLFHGDRVIVRIAGRDRRGRLEGALVEILERNTQRVIGRLYQEGGVGFVVPDNKR
LVHEVVIPSDRLNGAEQGQIVVAEITDQPTRRTPPIGRIIEILGDHLQPGMETEIAIRAH
DLPVAWSPEVEVEIAGLSAEVPESAKAGRVDLRHLPLVTIDGADARDFDDAVYCERKPKG
WRLLVCIADVSAYVRPGTALDREARLRGNSVYFPDRVIPMLPEILSNGLCSLKPGVDRLC
MAAELYINRSGQITRARFFEAVMRSQAQLTYDQVAALFEGDPELCAQFAELLPHLHQLYQ
LYQALHVQRVGRGALDFETIETRFIFNEQGRIAAIVPLVRNDAHRLIEECMLAANVAAAR
QFQRRRLPAIYRVHEAPSGDKRNDLREFLAQLGLKLPGGEEPTTADYARLLAQIQDRPDR
HLIQTVVLRSMQQAMYSTDNIGHFGLAYDAYTHFTSPIRRYPDLVVHRLIKHLLAGGKAA
DLEYTTSELQQIAEWCSGTERRADEATRDAEMALKCEYMQALLGEVFAGTITSVNAFGLF
VELDAIYVDGLIHVTALDHDFYHFDPIGYRLIGERTGRVYRLGDRLWVQVAAVNLDERKI
DFIPAKPPASAKRLSRSVEKTGRGKAASGRSAASRQKKAQRRQADRSAGGSSDD
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
gtgagccgacgtcaaccgacccagactgcagcgctcgttgatccctatcgtgagcgcgag
gccaaaaaatacgcccatccgatccccagccgcgagtttatcctcgacaccctcaatcag
cgcggcccgctgtcattcgagaacctcgccaaatgcttggcgcttgccgaagaatatgag
ctggtcgcgctcgaacggcgcctgacggcgatggtgcgcgacggtcagttagtgcgcaac
cgcgcccaggcctattgtccggtcaacaaacgcgacctgatcgccggtcgggtgatcggt
catcccgatggctttgggtttgtgcgccccgacgaggggggggatgacctgtatctctat
cccaaggagatgcgcccgctctttcatggcgatcgggtcatcgtgcgcatcgccgggcgc
gatcggcgcgggcgcttggaaggggcgctggtcgagatcctggagcgtaacacccaacgg
gtgatcgggcggctctatcaggagggcggggtcggctttgtcgtccctgacaacaaacgg
ctggtccatgaggtggtcatcccgagcgaccgtctcaacggcgccgaacaaggccaaatc
gtagtcgccgagatcaccgaccagccgacccgccgtacccccccgatcggccgtatcatc
gagatcctgggcgatcatctgcagcccggcatggagaccgagatcgctatccgcgcccat
gacttgccggtggcctggtcgcccgaggtcgaggtcgagatcgcgggcctaagcgctgag
gtccccgagtcggccaaggcgggtcgcgtcgatctgcgccatctgccgctagttaccatc
gatggtgccgacgcccgcgatttcgatgatgcggtctattgcgagcgcaaacccaagggt
tggcggcttttggtctgtatcgccgatgtttcggcctatgtgcggccgggaacggcgctc
gaccgcgaggcgaggttgcgcggcaactcggtctatttccccgaccgcgtcatccccatg
ctccccgaaatcctgtccaatggcctgtgctccctcaaacctggggtggatcgcctgtgc
atggccgccgagctatatatcaatcgttcgggtcagatcacccgcgccaggttcttcgag
gcggtgatgcgctcgcaggcgcagctgacctatgatcaggtcgcggccctcttcgagggc
gaccctgaactctgtgcccagtttgccgagctcctgccgcacctccaccagctctatcag
ctctatcaggccctgcatgtccagcgggtggggcgcggggcgcttgacttcgagaccatc
gagacccgattcatctttaatgaacagggccggatcgcggcgatcgtgccccttgtccgc
aatgacgcccaccggctgatcgaggagtgcatgctggcggccaatgtcgcggctgcccgc
caattccagcgccgccgcctgccggccatctatcgcgtgcatgaggcgccgagcggggac
aagcgcaacgacctgcgcgagtttttggcccaactgggactcaagctccccgggggggaa
gagccgacgaccgccgactatgcgcggctgctcgcacagatccaagatcgccctgaccgc
catctgatccagaccgtggtattgcgctccatgcagcaggcgatgtatagcaccgacaac
atcggtcatttcggtttggcctatgacgcctatacccatttcacctcaccgattcgccgt
tatccggacctcgtcgtccatcgtctgatcaagcacctgctggccggcggcaaggccgca
gatctcgaatacaccacgtccgagctgcaacagatcgccgaatggtgttcggggaccgag
cggcgagcagacgaggcgacccgcgatgccgagatggccctcaaatgtgaatatatgcaa
gccttgctgggcgaggtcttcgcggggaccatcaccagcgtcaatgcattcgggctcttc
gtcgaactcgatgccatctatgtcgatggtctgatccatgtcacggcgctcgatcatgac
ttctatcatttcgaccccatcggttaccggctgatcggcgagcgcacggggcgggtctat
cggctgggcgatcggctctgggtccaggtcgcggcggtcaatctcgatgagcgtaagatc
gatttcatccccgcaaagccgcctgccagcgccaagcgtctcagccggtcggtcgagaag
acggggagagggaaggcagcatcaggccggtctgcggctagccgtcaaaaaaaggcgcag
cggcgccaggcagatcgctcagcgggcgggtcaagtgatgactga
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