Caldichromatium japonicum: GWK36_02105
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Entry
GWK36_02105 CDS
T07151
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cjap
Caldichromatium japonicum
Brite
KEGG Orthology (KO) [BR:
cjap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjap03019
]
GWK36_02105 (hrpA)
Enzymes [BR:
cjap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GWK36_02105 (hrpA)
Messenger RNA biogenesis [BR:
cjap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GWK36_02105 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_25
AAA_19
NACHT
T2SSE
nSTAND3
NLS_NINJA_AFP
Motif
Other DBs
NCBI-ProteinID:
QIK36989
UniProt:
A0A6G7VA97
LinkDB
All DBs
Position
complement(433581..437528)
Genome browser
AA seq
1315 aa
AA seq
DB search
MDVPAHQAIATCLLRDRPALRARWRGLRKQAHTGQPNEQALNALWERIRSSQAIVAQRQA
LTPPQIDYPDLPVSERRGELAELIIAHQVVIVCGETGSGKSTQLPKLCLELGRGHFGRIG
HTQPRRIAARALASRIAQELGVELGGLVGSKVRFHDRVRPESAIKLMTDGILLNEIQRDR
LLLEYDTLIIDEAHERSLNIDFLLGYLKGLLPRRPELKLIVTSATIDPDRFARHFADDQG
QPAPIIEISGRLYPAEIRYRPPEDENAAECDESMQQGIIAAVDELARLGPGDILVFLSGE
REIRTTAETLRRHHPPSTEILPLYARQGPQEQGRIFQPHATRRIVLATNVAETSLTVPGI
HYVVDTGFARISRYSHRTQVQRLPIERIAQASAKQRAGRCGRVADGVCIRLYSEENHLAR
APYTEPEILRTNLAAVILRMKLLGFGAIEHFPFIDPPDPRLVRDGYRTLEELGALAGEGT
LTPLGCQLARLPLDPRIGRMLLEADRFQGLEEVMVIAAALSIQDPRERPLDKQQAADEIH
ATFQHPQSDFLGLLNLWQFVERERARLSRRQFQALCQRHFLSWNRVQEWRDVYLQLREQM
LEMGFKDSSVGQPPYDADAYARIHRALLSGLLSHIGFRESEREFQGARGSRFLIHPSSAL
FAKPPKWVMVAERVETTRAYGRIAAAIEPAWVEQAAGHLIQRSYFEPHWQAATGQVAAFE
RVSLFGITLIPKRRVNYGPINPAEAREVFIRAALVGGEFHTRAPFWRHNRELIDEIRRLE
AKRRRELLDDEAIYAFYAERIPLGIYSKPLFERWLRETARQQPRLLHMRLADLIGEGQGV
SCQDFPDVIQVGASRLPLEYRFAPGEPEDGLTLVVPLPLINQVAPERLEWLVPGLLPERI
AALLRSLPKSLRKPLVPIPDTAQRLAAQLAPAGRPLIQALAEAIRAATGLQVPEDAWDPG
EVPPYLRMKVKLIDEQGRTLALSEDLRALQRAYGAQATQGFSRLPDPGLERSGIKRWDFG
DLPESVDLDQGRLRVRGYPALVNGDEGLALRVLDSKETAERAHRLGLRRLLHLHLGSTLR
PLEQSLTEREMRLQYAKAPSPPEASALGCRHPESAATSKPPDLAEELLDLILDLAFIEGQ
PPIRSQQVFEECLRAGKARLFATAEEVKRLVAAILSDYHALRQRLAGITQSHWQESLRDI
QDQLDGLVFRGFLQAIPYDHLKDYPRYLKAIGIRLDRLRHAPDRDRRWMAEMSGVLARWR
ERVETLRAAGRVDPRLDEIRWLIEELRVSLFAQQLGTRLPVSVKRIETRWQELGL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggatgttcctgctcatcaggctatcgccacctgtctgctgcgcgatcgccctgccctg
cgcgctcgttggcgcggtctgcgcaaacaggcgcacaccggtcagccgaacgagcaggcc
ctcaatgcgctctgggaacgcatccgcagctcacaagccatcgtcgcccagcgccaggca
ctgaccccaccccagatcgattatccggacctgccggtcagcgagcgacgaggggagctt
gccgagctgatcattgcccatcaggtcgtcatcgtctgcggtgagaccggctcgggcaaa
tcgacccagttacccaagctatgtctggagcttgggcgcggtcacttcggacggatcggg
cacacccagcccagacggatcgctgcgcgcgccctggcatcacgcatcgcccaggagctc
ggggttgaattaggagggctcgtcggttccaaggtgcgtttccatgaccgcgtgcgcccg
gagagcgcgatcaagctgatgaccgatgggatcctgctcaatgagatccagcgggatcgg
ctgttgcttgagtatgacaccttgatcatcgatgaagcgcatgaacgcagcctcaacatc
gattttctcttggggtatctcaaagggctcctgccgcggcgcccggagctcaagctcatt
gtcacctcggcgaccatcgaccccgatcgcttcgcccgccatttcgccgatgatcaaggc
cagccagcgccgatcatcgagatctctggacggctgtatccggccgagatccgctatcgc
ccgccagaagacgagaacgccgccgagtgcgatgagtccatgcagcaggggatcatcgcc
gcggtcgatgagctagcgcgcctgggtccaggcgatattctggtctttttgtccggcgag
cgtgagatccgcaccactgccgagaccttgcgccgccatcacccgccctcgaccgagatc
ctgccgctctatgcccggcaaggcccgcaagagcagggacggatctttcagccacatgcc
acccggcgcatcgtgctggcgaccaatgtcgccgagacctcgctcaccgtccctgggatc
cattacgtcgtcgataccggatttgcccgcatcagccgctatagtcaccgtacccaggta
cagcgcctaccgatcgaacgcatcgcccaggccagcgccaaacagcgcgccgggcgctgc
gggcgggtggccgatggggtctgcatccgtctctatagcgaagagaaccatctcgcccgc
gccccctacaccgaacccgagatcctgcgcaccaatttggcggcagtgatcctgcgcatg
aagctgttggggttcggggcgatcgagcactttcccttcattgatccccctgaccccagg
ctggtacgcgacggctatcgcaccctggaagagctcggcgcactcgctggcgagggtacg
ctcacccccctggggtgccagctcgcccgcctgccgctcgacccgcgtatcgggcggatg
ttgttagaggctgatcgtttccagggtctggaggaggtcatggtgatcgccgccgcctta
agcatccaggacccgcgcgagcgccctctggataaacaacaggccgccgacgagatccat
gctaccttccagcacccccaatcggattttttggggctgctcaacctctggcagtttgtc
gaacgcgagcgcgcgaggctgtcgcgccgccagtttcaggcgctctgtcagcggcacttc
ttgtcttggaatcgggtgcaggagtggcgggatgtatatctgcagttgcgcgaacagatg
ctcgagatggggtttaaggattcatccgtcggccagccgccctatgatgccgacgcctat
gcccgcatccatcgcgccttgctcagtgggctcttgagccacatcgggtttcgcgagtcc
gagcgcgagtttcagggggcgcgcgggagccgtttcttgatccatccgagctctgccctc
ttcgccaagccacccaaatgggtcatggtcgccgagcgggtggagaccacccgcgcctat
gggcggatcgctgctgccattgagcccgcctgggtcgagcaggcggcaggacatctcatt
cagcgcagctattttgagccacattggcaggcggcaaccggccaggtcgcagccttcgag
cgggtaagcctctttggtatcactctgatccccaagcgccgcgtcaactatgggccgatc
aatccggcggaggcgcgcgaggtctttatccgggcggcgctggtcggcggtgagtttcac
acccgcgcccccttctggcgccacaaccgcgagctgatcgatgagatccgccggcttgag
gccaaacgccggcgcgagctcttagacgatgaggcgatctatgccttttatgccgaacgc
atccccctggggatctattccaagccgctgtttgagcgctggctgcgggagacggcgcgc
caacagcctaggctcctgcacatgcgtctcgccgacctcatcggcgaggggcaaggggtc
agttgccaggacttccccgatgtcatccaggtcggggcaagtcgcctgccgctcgaatat
cgcttcgccccaggcgagccagaggacggcctgaccctggtcgtgcccctaccgctcatc
aatcaggtcgcacccgagcgcctggaatggctggtgcccggacttctccccgagcggatc
gcagccctcctgcgtagcctgcccaagtcgttgcgcaaaccgctcgtgccgatccccgat
accgcccagaggctcgcggcccagcttgcccctgccggccggcccttgatccaggccttg
gccgaagcgatccgcgccgcgaccggtctccaggtccccgaggacgcctgggaccccggc
gaggtccctccttatctgcggatgaaggtcaagctcatcgatgagcagggccgtaccctg
gctttgagcgaggatctgcgtgcattacaacgcgcctatggcgcccaggccacccaggga
ttcagtcggctccccgaccctgggttggagcgcagcgggatcaaacgctgggacttcggc
gacctgcccgagtcggtggacctcgaccagggccggctgcgggtacgcggttatcccgca
ctggtcaatggcgatgagggactcgcgctccgagtgctagactccaaagagaccgccgag
cgcgcccatcgcctgggtctgcgtcgtctcctgcacctgcatctcggcagcaccctgcgt
ccgctcgaacagtcgctcactgagcgcgagatgcgtctgcaatatgccaaggcgccatcg
ccccctgaagcgagcgccttggggtgccgacaccctgaatccgctgccacctccaagccg
cccgatctggccgaggagttgctcgatctgatcctggacctagcattcatcgagggccag
ccgcccatccgcagccagcaggtcttcgaggagtgcctacgggcgggcaaggcgcgtctg
tttgccaccgccgaggaagtcaagcgactggttgcggcgatcctttcggattatcacgcc
ctgcgccaacgtttggctggaattactcagagtcactggcaagagagcctgcgcgacatc
caggaccagctcgatggactggtctttcgcggcttcttgcaggccattccctacgaccat
ctcaaggactatccgcgctatctcaaggcgatcgggatcagactcgatcgcctgcgccat
gcccccgaccgtgaccggcgctggatggcagagatgtccggggtacttgcgcgctggcgc
gagcgggttgagacgctgcgtgccgcggggcgggtcgatccgcgtctcgatgagatccgt
tggctcatcgaagagcttcgggtctcgctctttgcccagcagctcggtacccgtctgccg
gtctcggtcaagcggatcgagacgcgctggcaagagttggggctgtga
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