Caldichromatium japonicum: GWK36_04355
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Entry
GWK36_04355 CDS
T07151
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cjap
Caldichromatium japonicum
Brite
KEGG Orthology (KO) [BR:
cjap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cjap03016
]
GWK36_04355
Enzymes [BR:
cjap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GWK36_04355
Transfer RNA biogenesis [BR:
cjap03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GWK36_04355
Prokaryotic type
tRNA splicing ligases
GWK36_04355
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIK37343
UniProt:
A0A6G7VB92
LinkDB
All DBs
Position
complement(884921..886117)
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AA seq
398 aa
AA seq
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MPIQQVIAEGGKPIKVWTQDLDEVSRAQLINISRLPFIHHHVAAMPDVHAGIGATIGSVI
ATRGAIIPAAVGVDIGCGMAAVRTSLTAEQIDERVLRRVYDQICRDVPAGREQHSDTRAP
HDAAKPFAEPLQAMLAKHPKLLKSFGKHANWVNQLGTLGSGNHFIEVCLDESGKLWVMLH
TGSRGIGNAMATYFIELAQREIDRQRAQLPDRDLAYFSEDKPYFKDYLEAVDWAQRYARA
NRNQIMRLVLSALKRHLPPFTLEGEVIDCHHNYVERERHLGAKVWVTRKGAIRAGKGELG
IVPGSMGTQSYIVRGLGNPESFCSSAHGAGRCMSRNAAAKQFTPADLAAQTQGVICRKDK
HVLDEIPAAYKEIDQVMTNQSDLVEVVYTLKQVVCIKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgccgatccaacaagtgattgccgagggcggcaagcccatcaaggtctggacccaggac
ctggatgaggtatcgcgcgcccagttgatcaatatctcgcggcttccctttatccatcat
catgtcgccgccatgccggacgtgcatgcagggatcggcgcgaccatcggcagtgtcatc
gccacccgcggcgccatcatccctgcagcggtaggggtagacatcggttgcgggatggcg
gcagtgcgcacctcgttgaccgcagagcagatcgacgaacgggtgctgcgcagggtctat
gaccagatctgccgcgatgtgcctgcaggccgcgagcagcacagcgatacccgtgccccc
cacgatgccgccaagccattcgccgagccactgcaggccatgcttgccaaacatcccaaa
ctgctcaaatccttcggcaagcatgcaaactgggtcaatcagctcgggaccttagggagt
ggcaatcatttcatcgaggtctgtcttgatgaatcgggcaagctctgggtgatgctccat
accggaagccgtgggatcggcaatgccatggcgacctattttatcgagctcgcccagcgc
gagatcgatcgccaaagggcccaactgccagatcgagacctggcctatttcagcgaggac
aagccctatttcaaggattatcttgaggcggtcgattgggcacagcgctatgcgcgcgca
aaccgcaaccagatcatgcgcttggtattgtcggcgctcaaacgtcacctgccgccattt
acacttgagggcgaggtgatcgactgtcatcacaattatgtcgagcgcgaacggcatctc
ggcgccaaggtatgggtcacgcgcaagggcgccatccgcgccggaaaaggcgagttgggg
atcgtgcctgggagcatggggacacaaagctatatcgtgcgcgggctcggcaatcctgag
agtttctgctcaagcgcccatggtgccgggcgatgcatgagccgcaatgccgccgcgaaa
caatttacccccgccgatcttgccgcccagacacagggggtgatctgtcgcaaggacaag
cacgtgctcgatgagatcccagcagcctataaagagatcgatcaggtgatgaccaatcag
tctgacctggtcgaggtggtgtatacactcaaacaggtggtctgtatcaagggttaa
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