Caldichromatium japonicum: GWK36_05430
Help
Entry
GWK36_05430 CDS
T07151
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cjap
Caldichromatium japonicum
Brite
KEGG Orthology (KO) [BR:
cjap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cjap03016
]
GWK36_05430
Enzymes [BR:
cjap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GWK36_05430
Transfer RNA biogenesis [BR:
cjap03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GWK36_05430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QIK37510
UniProt:
A0A6G7VC79
LinkDB
All DBs
Position
1101076..1102905
Genome browser
AA seq
609 aa
AA seq
DB search
MATDQATPPLDSLVLYKVKPARVIALGDKIEIELEGGETKRVRPKDITLLHPGPVRSFAE
LAPLQGELDAAWELLEGSETTLRDLAELIFNDYTPASAWATWQRVAEGLAFVGTPDAIQI
RPRAVVEREQAERAAKESAERDWRSFLERMQQARLLPEDRVRLAEVERLALGLSEHSRIL
EALGYPETPEGAHRALIRVGHWPERYNPYPTRCGVAQGDPDLPVPGLGDEERLDLTGLAA
YAIDDEGTQDPDDALSIEGDRLWVHVADVAALVSSDSPIEREARARGANLYLPEGIINML
PAPVTEHLGLGLQPISPALSFAIRCDPKGMLQDIEVHRSWVRVTRLSYAEVEGRLDDASF
ADLRALTERYRARRFAQGASQLNLPEVSLRLDGEGRIQIRPLPPLMSRELVTDAMLMAGE
AAARFCLERAIPIPFAVQPPPDNNDPAQDLASMYAKRRSFKPTRLVLEPDRHAGLGIELY
TRATSPLRRYSDLLVHQQIRAWLLGRPLLEPTQVLERIAEAELAAANVRRCERLANQHWK
LIYLKEHPNWRGEGVVVGLEERRAIMLVPELALEARVRLREGTTLNQSVRLAVNEVDLPD
LNVSFRPLS
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
ttggctaccgatcaagcgacaccgcccctcgacagcctggttttgtataaggtcaaaccg
gcacgggtcatcgcgctcggcgacaagatcgagatcgagctagagggtggcgaaaccaag
cgcgttcgtcccaaggatattacgctcctccatcccgggccggtgcgcagcttcgccgag
ctagcgccactccaaggcgagctggatgccgcctgggagctcttggagggcagcgaaacc
accctacgcgaccttgccgagctcatcttcaacgactatacgccggcaagcgcctgggcg
acctggcagcgggtcgctgagggcttggcctttgtcggcacccctgacgcgatccagatc
cgcccgcgcgccgttgtcgagcgggaacaggccgagcgtgccgccaaggaatctgccgag
cgcgactggcgcagttttctggaacgcatgcagcaagcgcgtctcctgccagaggatcgg
gtgcgcttggccgaggtcgagcgtttggcgctgggtttgagcgaacacagccgcatcctg
gaggcgctcggctatcccgagactccagaaggcgcccatcgcgccttgatccgggtcggc
cattggcccgaacgttacaacccttatcccacgcgttgtggggttgcacagggcgatccc
gatttgccagtccctggactgggcgatgaggagcggctggatctgaccgggcttgccgcc
tatgccatcgacgacgagggcactcaggaccccgacgacgccttgagcatcgagggggat
cggctgtgggttcatgtcgccgatgtcgctgccttggtctcatctgacagcccgatcgaa
cgcgaggcacgtgcccgcggtgccaatctgtatctgcccgaagggatcatcaacatgctg
ccggcgccggtgaccgagcatctgggcctgggtctgcagcccatctcaccggcactgtcc
tttgccatccgctgtgatcccaagggcatgctccaagacatcgaggtgcaccggagctgg
gtgcgggtgacacgattgagctatgccgaggtcgaggggcgcctggatgatgcgtccttc
gctgacctgcgcgcactcaccgagcgctatcgcgcgcggcgtttcgcccagggtgcaagc
cagctgaacctgcctgaagtgagtctgaggctggatggcgaaggccgcatccagatccgc
cccttgccgcccctgatgagccgcgagctggtcaccgacgctatgctgatggccggcgaa
gctgcggcgcgtttttgtctagaacgcgcgattcctatcccctttgcggtccagccgccg
cccgacaacaacgatccggcgcaggatctcgccagcatgtatgccaagcggcggtccttt
aaaccgacccgcctggtgctcgaacccgatcgtcatgcgggcctggggatcgaactttat
acccgagccaccagcccattgcggcgctattcggatctattggtgcaccaacagatccgc
gcctggctcttgggccgcccactgcttgagcctacccaggtgcttgaacggatcgccgag
gcagagcttgccgcggcaaatgtgcgccgttgcgagcgcctcgccaatcagcactggaag
ctgatctatctcaaggagcatcccaattggcggggtgaaggggtcgtagtgggcttggag
gagcgtcgcgccatcatgcttgtccctgagcttgcgctcgaggccagggtgcgtctgcgc
gaaggtacgacgctcaatcaatcggtccggctcgccgtcaatgaggtggatctgcctgat
ctaaacgtcagcttccgcccgcttagttaa
DBGET
integrated database retrieval system
