Caldichromatium japonicum: GWK36_06450
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Entry
GWK36_06450 CDS
T07151
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
cjap
Caldichromatium japonicum
Pathway
cjap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GWK36_06450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjap03019
]
GWK36_06450
Enzymes [BR:
cjap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GWK36_06450
Messenger RNA biogenesis [BR:
cjap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GWK36_06450
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QIK37679
UniProt:
A0A6G7VC95
LinkDB
All DBs
Position
1305770..1307479
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AA seq
569 aa
AA seq
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MTAATHLTSIRFDTFALDARILAGLNDAGFVYCTPIQAEILPLAFAGQDVAGQAQTGTGK
TAAFLVALMQHLLSRPRALADTERCRPRALVMAPTRELAVQIHKDTQLLAGRTGLRSTVV
FGGTGYQQQREALAAGVDILIGTPGRLIDYYKQQVFDLKGIEVVVLDEADRMFDLGFIKD
IRYLFRQMPPPEQRLGMLFSATLSYRVTELAYEHMNQPRLIKIEAEQVTAENVRQVCYLT
ANDEKIPLLIGLIRSWPEGRVIVFVNTKREADRVWGHLQGNGIEAAVLSGDVPQPKRLRL
LREFTQGRVPVLVATDVAARGLHIPDVTHVVNYDLPEDLEDYVHRIGRTARAGASGDAVS
FVCETYAFCLPDIEQYIGSKIPIAPLDPALLVPIDPHSRRRPEHSEATERLQGRRERKIR
KEPPVQAIVSPATAEDSPTVGAEEATVTPQVAPNSETASRRPVVQWRFRTLDEHFFDQLV
DEWPERIGPEIEIPDMPLIRRIRRTRGQLEPSALTSPPLTSAPPTDSAAASISSETRASK
RRRRRRRPGVESGSARSESAPRQTPEPIS
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgccacccatctgacctcgattcgcttcgataccttcgccctggatgcgcgc
atcctcgcaggactcaatgatgccggtttcgtgtattgtacgccgatccaggccgagatc
ttgccgctggccttcgccggtcaggacgtggctgggcaggcccaaaccggcaccggtaag
accgcggcctttctcgtcgccttgatgcagcatctgctcagccgcccgcgggccctggcc
gatacggagcgctgccgcccgcgcgccttggtgatggcgccgacccgcgagctggcggtg
cagatccacaaggacacccaactcttagccgggcgcacggggctacgctcaacggtggtt
ttcggcgggacgggttatcagcaacagcgcgaagcgctcgccgctggcgtcgatatcctg
atcggcaccccggggcgattgatcgattattacaaacagcaggtctttgacctcaaaggt
atcgaggtagtggtcttagatgaggccgaccggatgttcgacctagggttcatcaaggat
atccgctatctcttccgccaaatgccgccgcccgagcagcggctggggatgctgttttca
gccaccctgtcctatcgggtcactgagctcgcctatgagcacatgaaccagccccgtttg
atcaagatcgaggctgagcaggtaacggctgagaatgtgcgccaggtctgttatctgacc
gcgaatgatgaaaagatcccgcttttgattgggttgatccggagctggcctgagggccgg
gtgatcgtctttgtcaataccaagcgcgaggccgaccgtgtttggggccatctccagggt
aatggcatcgaggcggcggtactctcaggcgatgtaccgcagcccaagcgcctgcgtctt
ctccgcgagttcacccaggggcgggtgccggtcctagtggcgacagatgtcgcagcgcgc
gggctgcatatcccagatgtcacccatgtggtcaattacgatctgcctgaggacctcgag
gactatgtgcaccgcatcgggcgcaccgcccgtgccggggcaagcggagatgcggtgagc
ttcgtctgtgaaacctacgccttttgcctgcccgacatcgagcagtatatcggctctaag
atcccgattgccccgctcgatccggcattgctggtcccaatcgatccacatagccgccgc
cgtcccgagcacagcgaagcgaccgagcgactacagggccgccgtgagcgtaagataagg
aaagaaccaccagtgcaggccatagtctcaccagcgacagccgaagattcgcctaccgtg
ggtgcagaggaggcgactgtaaccccgcaggtggcgcccaattccgagaccgcaagtaga
cgacccgtggtccaatggcgtttccgtaccctggatgagcacttctttgaccagctcgtc
gatgaatggcctgagcgcatcggacctgagatcgagattccggatatgccgctcatccgg
cgtattcgccgcacccgcggccagcttgagccttcggccttgactagcccacccctgacc
tcggcacctccaacggatagcgcagcagcgagcatctcatccgagacacgtgccagcaaa
aggcgccggcgccgacgcaggccgggcgtagaatcgggttcagcacgatcagaatccgcc
cccaggcaaacacccgaaccgatcagttag
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