Caldichromatium japonicum: GWK36_09235
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Entry
GWK36_09235 CDS
T07151
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cjap
Caldichromatium japonicum
Brite
KEGG Orthology (KO) [BR:
cjap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cjap03009
]
GWK36_09235 (rlmD)
Enzymes [BR:
cjap01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GWK36_09235 (rlmD)
Ribosome biogenesis [BR:
cjap03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GWK36_09235 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
RrnaAD
TRAM
Methyltransf_11
TRM5-TYW2_MTfase
Methyltr_RsmB-F
PCMT
MTS
Methyltransf_23
Cons_hypoth95
Methyltransf_15
N6_N4_Mtase
Methyltransf_4
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
QIK38136
UniProt:
A0A6G7VE44
LinkDB
All DBs
Position
complement(1883796..1885118)
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AA seq
440 aa
AA seq
DB search
MSHRPKPLPEPIETDIETLTPEGRGIARINGKTVFVDGALPGERVCLRYTRLQRRFDEAV
AEVILTPSPQRVVPRCPHFGVCGGCTLQHLDPSAQIRFKQAGLAETLERIGKVSPERWLD
PLTAGHWGYRRKARLGVRHVLKKGRVLIGFRERQGSLLADLRHCAVLHPLVGEHLVALAA
AIADLTIRDQVPQIEMAMGDGPGVLVVRAMRSPSPEDIERLLRFAAETGLHIYLQEGGIE
TIRPLPEQGVDLHYSLPGQGIEIGFQPADFTQVNLELNRKMVDQAIALLAPQPDDRVLDL
FCGLGNFTLPLARYAREVIGVEGDPGLVERALLNARRNGLENVRFYTADLQADTIIPPWG
EGSFDKALIDPPRSGAWAVLDWLPRLGVERLVYVSCYPATLARDAGHLVHGLGYRLCEAG
VMDMFPHTSHVESIALFERG
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgcatcgccctaagccgctccctgaacccatcgaaaccgatatcgagaccctgacc
cctgaagggcggggcatcgcccgcatcaatggcaagacggtcttcgtcgatggcgccttg
ccgggggagcgggtgtgtttgcgttacacccggttgcaacgccgattcgatgaggccgtc
gctgaggtaattttgaccccatcgccccagcgggttgtgccccgttgtccgcatttcggg
gtctgcggcggctgcaccctccagcatctcgatccctcggcccagatccgtttcaaacag
gccgggcttgccgagactttagagcgcatcggcaaggtcagccctgaacgctggctcgat
ccgttgaccgctgggcattgggggtatcggcgtaaggcgaggctcggggtgcgtcatgtg
ctcaaaaaggggcgggtgttgatcggctttcgggaacgccagggttccttgcttgctgat
ctcaggcactgcgcagtcctgcatccgctagtcggcgaacatttggtggcattggccgcg
gccatcgcggatctgactatccgcgatcaggtaccccagatcgagatggcaatgggcgat
ggacccggtgtgctcgtggtgcgcgccatgcgctcaccttctcctgaggatatagagcgt
ctactcaggttcgccgcggagacagggttgcacatctatcttcaggaaggcggtatcgag
accatccgtcccctgcccgagcaaggggtggacctgcactatagcctgccaggacagggg
attgagatcggtttccagcccgctgatttcacccaggtcaacctagagctcaaccgcaag
atggtggatcaagcgatcgcattgcttgctccgcagcctgatgacagggtgctggatctc
ttctgtggcctgggcaacttcaccctacccttggcgcgctatgcccgcgaggtgataggg
gtcgagggtgatcctggtctggttgaacgcgcgttgctcaatgcccggcgcaatggactg
gagaacgtgcgtttttataccgccgatctccaagcagacacgatcatccccccctggggc
gaggggtcctttgacaaagcgctgattgatccgccgcgcagcggggcctgggcggtattg
gactggctaccgcggctcggcgtcgagcgcctggtctatgtctcttgttatccggcgact
ctagcacgcgatgccggccatctggttcatgggcttggctatcgattatgcgaagctggg
gtcatggacatgttcccccataccagccatgtagaatcgatcgccttgtttgagcgaggc
tag
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