Caldichromatium japonicum: GWK36_10330
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Entry
GWK36_10330 CDS
T07151
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cjap
Caldichromatium japonicum
Pathway
cjap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GWK36_10330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjap03019
]
GWK36_10330
03009 Ribosome biogenesis [BR:
cjap03009
]
GWK36_10330
Enzymes [BR:
cjap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GWK36_10330
Messenger RNA biogenesis [BR:
cjap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GWK36_10330
Ribosome biogenesis [BR:
cjap03009
]
Prokaryotic type
rRNA helicases
GWK36_10330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
QIK38306
UniProt:
A0A6G7VEL0
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All DBs
Position
complement(2129684..2131570)
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AA seq
628 aa
AA seq
DB search
MDTPVATSVGFDALGLSPIIVESVLKLGYESPTAIQSQCIPHLLAGRDLLGQAQTGTGKT
AAFALPLLHRLDLNLPRPQVLVLTPTRELALQVAEAFQRYANGLGGFHVLPIYGGQGYGH
QLTQLKRNPQVIVGTPGRVIDHIRRGTLNLEAIRTLVLDEADEMLNMGFAEDIDWIFDQL
PPGLQVALFSATMPPEIRRVAQQRLVDPVEVKITAESETVETIDQQHCIVTRPHKLDALT
RIMELEVFDGLLIFVRTKNATLELADLLKAHGFAAEPLNGDMNQELRERTIERLKQGQLD
VLVATDVAARGLDVERITHVINYDIPTDPAAYVHRIGRTGRAGRTGRAILLVEPRERNLL
RSIERTIRRRIPAMELPSAAALSQSRIDRFIAEVRKTLLEQDLDFFYRLLARINQEQEIE
MLDLAAALAYLNQRERPLNIQEDLPPAAFGRRQDASDRQPRQRERGAKRQEERSWSERPR
HADRFAHERQPRAERTAESDLVPYRIEVGRQHGVTPREIVGAIANESGLAGRYIGRIEIH
EDHALVALPAGMPREILQHLKRVHIRGQALRIRPLHAQPETRFAEDGRNRPRPQENPARP
GRDETAERGFKPAWGNPFAPLPGRKFRP
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggacaccccagttgcaacgagcgtcggcttcgacgcactcggtctttctcccatcatc
gtcgagagcgtgctcaagctcggctatgagtcgccgacggcaatccaaagccagtgtatc
ccgcatctcctggccggacgcgacctcctcggtcaggcccaaaccggcactggcaagacc
gcggcctttgccctgccccttctccatcgcctcgacctcaatctgccgcgcccccaagtc
ctggtcctaacccctacccgtgagctcgcacttcaggttgccgaggcctttcaacgctat
gccaatgggcttggtggatttcatgtcctgccgatctacggtggacagggctatgggcac
cagctcacccaactcaagcgcaatccccaggtcatcgtcggcacgccggggcgggtgatc
gaccatatccggcgcgggaccttgaacctcgaggcgatccgcaccctggtgctggacgag
gccgacgagatgctcaacatgggcttcgccgaggatatcgactggatcttcgatcagctc
ccgccggggctccaggtggcgctcttttcggctaccatgccgcccgagatccggcgtgtc
gcccagcagcgtctggtggatccggttgaggtcaagatcaccgccgagtccgagacggtc
gagaccatcgaccagcagcattgcatcgtcacccggccccacaagctcgacgcgctcacc
cgcatcatggagctagaggtattcgacggactcttgatctttgtccgcaccaagaatgcg
accctagagttggccgatctgctgaaggcgcacggctttgctgccgagccgctcaacggc
gacatgaatcaagaactgcgcgagcgcaccatcgagcgtcttaaacaaggccagctcgat
gtcctggtggccacggacgtggcggcgcgcggcctagacgtcgagcgcatcacccatgtc
atcaactatgacatcccgaccgaccccgcggcctatgtccatcggatcggacgcaccgga
cgcgctggccgcacgggacgcgccattctgctggtcgagccgcgcgaacgtaatctcttg
cgctcgattgagcgcaccatccgccggcgcatcccggcgatggagctcccctcggcggcg
gcgctcagccaatcgcgcatcgatcgtttcatcgccgaggtgcgcaagaccctgctcgaa
caggacctggatttcttctaccgtctccttgcacggatcaaccaagagcaagagatcgag
atgctcgacctcgccgctgcactcgcctatctcaaccaacgcgagcggcccctcaatatc
caggaagacctcccgcctgctgcattcggccggcgccaggatgcctctgaccgccagccc
cgccagcgtgagcgcggcgctaagcggcaggaagagcgcagctggagcgaacgcccgcgc
cacgcggaccgttttgcccatgaacgccagccccgtgcagaacgcaccgcagagtcggat
cttgtgccctatcggatcgaggttgggcggcaacatggtgtgaccccgcgggagatcgtc
ggcgccatcgccaacgagtctgggcttgcagggcgctatatcggacggatcgagatccat
gaggatcatgcgctcgtggccctgccagccggtatgccgcgcgagatcctgcaacatctc
aaacgcgtccatatccgtggccaggccctgcggatcaggccgctgcatgcccaacccgag
acccggtttgcagaagacggacgaaaccgcccccgcccccaggaaaaccctgcccgacca
ggccgcgacgagaccgcagaacggggattcaaacctgcctggggcaatcccttcgccccc
ctcccgggccgcaaattccgtccttga
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