Campylobacter jejuni subsp. jejuni NCTC 11168-BN148: BN148_0631c
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Entry
BN148_0631c CDS
T02302
Name
(GenBank) ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cjb
Campylobacter jejuni subsp. jejuni NCTC 11168-BN148
Pathway
cjb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN148_0631c
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjb03019
]
BN148_0631c
03016 Transfer RNA biogenesis [BR:
cjb03016
]
BN148_0631c
Enzymes [BR:
cjb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BN148_0631c
Messenger RNA biogenesis [BR:
cjb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN148_0631c
Transfer RNA biogenesis [BR:
cjb03016
]
Prokaryotic type
tRNA degradation factors
BN148_0631c
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
CSD2
OB_RNB
Orthopox_F14
Motif
Other DBs
NCBI-ProteinID:
CCK66753
LinkDB
All DBs
Position
complement(592495..594429)
Genome browser
AA seq
644 aa
AA seq
DB search
MKEFLNSLSYGISSHEVNNEFKQIFRELLTNHIIKEHKNKYYLNNGFAFGVLDISSKGTG
FLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPSAKVILVLKRANETSLMIT
KRYGEAVLGMNIKTGLSTALKASQKSLKALPLGTILKIENENNNIIEVLGHIDDESVDEK
ISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDLRALPFCTIDPIHAKDFDDAIYF
DTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIYFPHIAIPMLPRPLSENICSLKPHL
DRLAYCFKITLNHENKVIKEELFEGIINSKRRFNYDEVDEILIQKPDLKELSWLYELFEI
TKNLRKMRLKNAFEFRTEELRMNLDENLSLKSTVFEKDTPSHNLIEDCMLLANKAAAKLI
DIGVFRNHLSADVRKIDKLLNELRELGIDVNFKPNLPELIRDIQALADELNLRAEVDKLI
IKAQKKAEYSSVNAGHFGLGFDKYSHFTSPIRRYSDLILHRLLKAKQKNDEKLFNYLLLN
IESTCENLSTLEREADKVAFDFMDRKFARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKG
ADIILYDTRVNLLENVEVQIMEADIVMAKIYAKITQRLIKEENV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagaatttttaaacagtcttagttatggcattagctctcacgaagtaaacaatgaa
tttaaacaaattttcagagaacttttaactaatcatatcattaaagaacacaaaaacaaa
tactatcttaacaatggttttgcctttggagtacttgatatttcgagtaaaggcacaggt
tttttacaatgctttgatgaaagtttcaaaaaagatcttttgatagaaaacaaaaaccta
aaaggcgcaaactataaagatatagtcgcagtaaaacttctacctttaaagaaaaaacgc
cccagtgcaaaggtgattttggttctaaaaagagccaatgaaacctctttaatgatcacc
aaaaggtatggcgaagccgtgcttggaatgaatatcaaaacaggattaagcactgcctta
aaagcttctcaaaaatccttaaaagcactacctttagggacaattttaaaaatagaaaat
gaaaataacaatatcatagaagttttaggacatatcgatgatgaaagcgtagatgaaaaa
atctccttagctctttttaataaaaataacgaatttagcgacgcttgcatcaaagaagct
ctagcaaacggcgatagtgttgatgcgagtatgtatgaaaatcgcatggatttaagagcc
ttgcctttttgcaccatagatcctatacatgcaaaagattttgatgatgcgatttatttt
gacactcaaaaacgagaaatttatgtagctattgctgatgttagcgaatatgtttatgct
tatagtgctatagataaagaagcaagaaatcgtggattttctatttattttccacatatt
gctatacctatgctacctcgtcctttaagtgaaaatatctgttctttaaaacctcattta
gatcgcttagcgtattgttttaaaatcacactcaatcatgaaaataaagtcataaaagaa
gaactttttgaaggtattatcaactcaaaacgccgttttaattatgatgaagttgatgaa
attttaatacaaaaacctgatttaaaagagctttcatggctttatgagctttttgaaatc
acaaaaaatttacgcaaaatgcgtcttaaaaatgcctttgaatttcgcaccgaagaatta
agaatgaatttagatgaaaatttaagtctaaaaagtacagtttttgaaaaagacacgcct
tcgcataatttgatcgaagattgtatgcttttagccaataaagccgcagcaaaactcata
gatataggtgtttttagaaatcacttaagtgctgatgtaagaaaaatcgataagctttta
aatgaattacgcgaattaggcatcgatgtaaattttaagcccaatcttcctgagctcata
cgcgacatacaagctttagctgatgagttaaatttaagagcagaagtagataaactcatc
atcaaagcacaaaaaaaagcggaatattctagcgtcaatgcgggacattttggcttaggt
tttgataaatactcacattttacaagccctataagaaggtattctgatcttattttgcac
agacttttaaaagccaagcaaaaaaacgatgaaaaactttttaattatctacttttaaac
atagaaagcacttgtgagaatcttagcacacttgaaagagaggcggataaggttgctttt
gattttatggatagaaaatttgctagatgggcagctaaaaatataggcaaaaaatttaaa
gctttagttgtccaaaatgatggagtttgcatagccaaactagatgatgaaatcaaagga
gcggatataatcctttatgatacgcgtgtaaatttgctagaaaatgttgaagtacaaatc
atggaagcggatatagttatggcaaaaatttatgctaaaatcacccaaagacttataaag
gaagaaaatgtatag
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