Callithrix jacchus (white-tufted-ear marmoset): 100385639
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Entry
100385639 CDS
T03264
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X2
KO
K28108
shortage in chiasmata 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cjc03036
]
100385639 (SHOC1)
Chromosome and associated proteins [BR:
cjc03036
]
Eukaryotic type
Meiosis-specific proteins
Others
100385639 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
100385639
NCBI-ProteinID:
XP_008999479
Ensembl:
ENSCJAG00000017593
LinkDB
All DBs
Position
1:complement(157074211..157180452)
Genome browser
AA seq
1509 aa
AA seq
DB search
MFSAFKYHAIDYLYENVVRKKFCRDALLLRIPSCLYQDESYHIAVTDNKFRRPWTRVSAV
SVLGMTDTSVLDQWKASLFVDDFLEKKTITRMVTQINCEFDEVVPSSNPDSQIEVEEASL
YTHMDYNDVFTPVSCLEKCSALQKQNKDLFIDDEEILFVNNRNHLPTLHTLLSRLKLFLV
KDPLLDFKGQIFTAANFFRGCFSLQEDLEVLGKEDICMDKENFCQEKLEDTIRSNKPSRF
LIEYDFLIPPSHKQEIDIPSHSELKESLNLVPEIITYVDEIEKLFKRDLTNKHGIEDIGD
IKFSSAEILAIQSQSEPEKCSKPGELELPLTPLDLSWQHSSVNSLCAELQTFPLSPVCKI
NLLTAEESANKYYMMWQLESCRSPLNSFLLTVPRIQEPYSQYSVTDLKKILSVKEESLII
NPVNTEWWKQAGLNLKMMQTLEHLNTDLCLDDLSSNDNKMELFLPSKVFQLEACLEHKSH
SSPIALIDEKSTNDHLSLPQKSLPLAKEVLDLCFSDERFSDKRPAKEEKPTNDQEPVNRI
IQKKENEDHFELDCIGPSIKSSSYSISKKASFFEHGKKQENDLDLLNDFIMLRNKYKTCT
SKTEVTNSDEKHDKEECSLTFQEESPIIHINKTLEEINQERGTDNVIEIQASDSQCQAFC
LLEAAASPILKNLISFCTLPTANWKFATVIFDQTRFLLKEQEKVVSDAVYQGTNDEREMT
FKHAALLHLLVTIRDVLLTCSLDTALGYLSKAKDTYKSILGPYLGDIWRQLQIVQFIRGK
KPETNYKIQELQCQIQSWMQCQQQVKVLIIIRMDSDGEKHLLIKILNKIEGLTLTVLHSN
ERKDFLESEGVLKGTSSCVVVHNQYIGADFPWSNFSFVVEYNYVEDSCWTKHCKELNIPY
TAFKVILPDTVLERSTLLDRFGGFLVEIQIPYVFFASEGLLNTPDILQLLESNYNITLVE
RGCSESLKLFGSSERYIVVTIDEHTAIVLQDMEELNCEKASDNIIMRLMALSFQYRYCWI
ILYTKETLNSEYQLTEKTLHHLALIYAALVSFRLNSEELDVKLIIAPGVEATALIIRQIA
DHNLMTSKTDPHEWLDKSWLEVSPSEEEMYLLDFPCINPLVAQLMLNKAPSLHWILLATL
CQLQELLPEVPEKVLKHFCSITSLFKISSSSITKSPQISSPQENRNQISAFSSQSSTSDL
DSVIQEHNECYQYLGLGETLQEDTTTTSNYNSSIMELREMAGFLPPVTSYNQTSYWKDSS
CNPDNVQNTPSLINTESRRLAYNSFLNHRESESDVFSLGLTQMNCETIKSPIDTQKRVSV
VPSFINSQKRRTHEANGFVNKEGADPIFLLEGSQSPLHWNFKKNIWEQENHSFNLQYGTE
QTTCNKLFSQKGNLFTDQQKCQSNEFEGLTCENSNDETFWKELPSVPSLDLFCASDSNAN
QKEFDSLYFYQRYGKSLGEKRHSESSFNSGDKESLTGFMYSQRPQFKKRRLAYEKVPGRV
DGQTRLTFF
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atgttttcagcattcaaatatcatgcaatagactatttatatgagaatgtagttagaaag
aagttttgtagagatgctttattgcttcgaatcccttcatgtttatatcaagatgaaagt
taccatatagcagttaccgataataaatttaggaggccatggacaagagtctcagctgtt
tcagttctgggaatgacagatacctcagtcttggaccaatggaaagcaagtctctttgtg
gacgacttccttgagaaaaaaacaattacaagaatggtgacccagattaactgtgaattt
gacgaagttgttccaagttcaaatccagactcccaaattgaagtagaggaggccagctta
tatacccacatggactataatgatgtctttactcctgtcagctgtttagaaaaatgttca
gcacttcaaaaacagaacaaagatttatttattgatgatgaagaaatactttttgtaaat
aatagaaatcacctaccaaccttgcatactctcttgagtagactaaaactatttttggta
aaggatcctcttttagatttcaaaggacagatcttcacagcagctaattttttcagggga
tgtttttctcttcaagaagatttggaagttttggggaaagaagatatttgtatggacaaa
gagaacttttgtcaggagaaactagaagatacaatacgttcaaataagccatcacgtttt
cttattgagtatgacttcttaatacctccaagccacaaacaagaaattgatattccatca
cactcggaactgaaggagtcattaaacctagtgccagaaataataacctatgtcgatgaa
attgaaaagcttttcaaaagagatcttactaacaagcacggaattgaggatatcggggat
ataaaattcagctccgcagaaattttggccattcaaagccagagtgaaccagaaaagtgc
agtaaaccaggagagttagaattgccactaactcctctagacctatcatggcagcattct
tcagtgaattcattatgtgcagaacttcagacatttccattatctccggtttgcaaaatt
aacttgcttactgctgaagaatcagctaataaatactacatgatgtggcaattagaaagc
tgtagaagccctttgaactcatttttgcttacagtaccaagaattcaagagccctacagc
caatattcagttaccgatttgaaaaagatattatctgttaaagaagaaagccttattatt
aatcccgtaaacacagagtggtggaaacaagcaggactaaatctgaaaatgatgcaaact
ttggaacatctgaatacggatttatgtcttgatgatctatcttctaatgacaataaaatg
gagctatttttgccttcaaaagtatttcaattggaagcatgtttagaacataaaagtcat
tcttcacctattgcacttattgatgaaaaatctacaaatgatcatttatcacttccacaa
aagagtctacctctggcaaaagaagtactagatctatgtttttctgatgaacgtttctct
gataaaagaccagcaaaagaggaaaaaccaacaaatgaccaagaaccagtaaatagaata
atccaaaagaaagaaaatgaagatcactttgaacttgactgcataggaccatctattaaa
tcatcttcctattcaataagtaaaaaagcatctttttttgaacatggtaaaaaacaagag
aatgatttagaccttttgaacgattttattatgctgcgaaataaatataagacttgcacc
tcaaagactgaagtcaccaacagtgatgaaaaacatgataaagaagaatgttctttgact
tttcaagaagaaagtcctatcattcatattaataaaaccctagaggaaataaatcaggaa
aggggaacagataatgtcattgaaattcaagcatcagatagccagtgccaagcattttgc
ctccttgaagcggcagcttctcctatcttaaaaaaccttatatctttctgtactctccct
actgctaattggaaatttgccactgttatttttgaccaaacaaggtttctcttaaaggaa
caagaaaaagtagtaagtgatgctgtttaccaaggtacaaatgatgaaagagaaatgaca
ttcaagcatgctgctcttttacatcttctggtaacaattagagatgtccttttaacatgc
agcttggacacagcattgggatatttgtcaaaggcaaaagatacctacaagagcatttta
ggcccctatttgggtgacatttggagacagctgcagatcgtacagtttattagggggaaa
aagcctgaaaccaactacaagatacaagaattgcaatgtcagatacaaagttggatgcaa
tgtcaacagcaagttaaggtactgattataataagaatggactcagatggtgaaaaacat
ttactcattaaaattcttaacaaaatagaaggtttaacactgactgtccttcattcaaat
gaaaggaaagattttctggaatctgaaggtgttttaaagggtacaagttcctgtgtagtt
gtacataatcaatatattggagcagatttcccctggagtaatttctcatttgtggtagaa
tacaattatgtggaagactcttgttggactaaacactgcaaagagttgaatattccttac
acggcctttaaagtgattcttccagacacagttttagaaagaagcacattgctggataga
tttggaggttttcttgtggaaattcagattccatatgtgttttttgcatctgaaggactt
cttaatactccagacatacttcagctgctagaatccaactataatatcacactggtagag
agaggctgcagtgagtcattgaaactctttggaagttcagagcgttacatagtggtgaca
attgatgaacacactgccatagttttgcaggatatggaagaattaaattgtgagaaggca
tcagacaatattattatgaggctgatggcattatcattccagtacagatattgttggata
attttatacaccaaagaaacattaaattcagagtatcagcttacagaaaagacacttcat
cacctagcactgatttatgcagctttggtgtcatttaggctaaactctgaagaactggat
gtaaagcttataattgccccaggagtagaagcaactgccttgataattcgacagattgct
gaccacaatttaatgacctcaaagacagatcctcatgaatggttggataaatcctggctt
gaagtttcaccgtctgaggaagaaatgtacttacttgattttccatgtattaacccattg
gtggctcagctcatgctaaataaagcaccttcactgcactggatattattagcaactctg
tgtcaacttcaggaactcctacctgaagttccagaaaaagtgttaaagcatttttgtagt
atcacttccctattcaagattagttcttcttccataacaaaatcaccgcaaatttcatca
cctcaggaaaataggaatcagattagtgccttctcttctcagagttcaacttctgattta
gactccgtcattcaagaacataatgaatgttatcagtatttaggattaggagagacattg
caggaagacacaaccaccacttcgaactacaactcttccattatggaactaagagaaatg
gcaggttttttaccacctgtaacttcatacaatcagaccagctactggaaagactccagt
tgtaaccctgataatgtgcagaatactccttctctaattaatacagaatcaagaagactg
gcttataactcctttctaaaccacagagagtcagagtcagatgtcttttctttgggtcta
acacaaatgaactgtgaaactataaaatcaccaattgacactcagaagagagtgtcagtt
gtccccagttttataaactctcagaaaagaagaacacacgaagcaaacggttttgtaaat
aaagaaggagctgaccctatctttttactagagggctctcaatctcctcttcattggaac
tttaagaaaaatatatgggaacaagagaatcactcgttcaacttacaatatggtacagag
cagactacatgcaacaaattgttctctcagaaaggtaatttattcactgatcagcaaaaa
tgtcaatcaaatgagtttgaaggcctcacatgtgaaaattcaaatgatgagactttctgg
aaagaattaccatctgtccccagtttggatttattttgtgcttctgattctaatgcaaat
caaaaagaattcgacagcctttatttctaccaaagatatggaaaaagtttaggagagaaa
aggcactctgaatcttcatttaactcaggagacaaggaatctttaacaggttttatgtac
tcacaacgaccacaattcaaaaaacgacgtctagcatatgaaaaagtccctggtagagtt
gatgggcagactcggctgacgtttttttga
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integrated database retrieval system
