Callithrix jacchus (white-tufted-ear marmoset): 100385958
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Entry
100385958 CDS
T03264
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03082
ATP-dependent chromatin remodeling
cjc04714
Thermogenesis
cjc05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100385958 (ARID1A)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100385958 (ARID1A)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100385958 (ARID1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjc03000
]
100385958 (ARID1A)
03021 Transcription machinery [BR:
cjc03021
]
100385958 (ARID1A)
03036 Chromosome and associated proteins [BR:
cjc03036
]
100385958 (ARID1A)
Transcription factors [BR:
cjc03000
]
Eukaryotic type
Helix-turn-helix
ARID
100385958 (ARID1A)
Transcription machinery [BR:
cjc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100385958 (ARID1A)
Chromosome and associated proteins [BR:
cjc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
100385958 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
100385958
NCBI-ProteinID:
XP_035164163
Ensembl:
ENSCJAG00000009833
UniProt:
A0A5K1TVG1
LinkDB
All DBs
Position
7:60449507..60533481
Genome browser
AA seq
2289 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPPPPPSELKKADQQQREEAGGEAAAAAAAERGEMKAAAGQE
SEGPAVGPPQPLGKELQDGAESNGGGGSGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNL
TEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQ
SPGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGG
TPGSGAAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLN
QLLTSPSSARGYQGYPGADYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAAAASGGAQ
QRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQG
HGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQ
SPHPQQQQPPYSQQPPSQTPHGQPSYQQQPQSQPPQLQPSQPPYSQQPSQPPHQQSPTPY
PSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSSLSQQAAYPQPQSQQSQQTAYSQ
QRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTE
GALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPL
SPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPR
QPSGGQIHTGMGSYQQNSMGSYGPQGGQYGPQGGYPRQPNYNALPNANYPSAGMAGGINP
MGAGGQMHGQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQVGSGMCPPPGGMNRKT
QETVAMHVAANSIQNRPPGYPNMNQGGMIATGPPYGQGINSMAGMINPQGPPYSMGGTMA
NNSAGMAASPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELG
GEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRE
LATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSP
AGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFNDGS
DSTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGG
MGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTGAPQPNLMPSNPD
SGMYSPSRYPPQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYPQQQQNYKRPMDGT
YGPPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNAYP
ATATAATERRPAGGPQNQFPFQFGRDRVSAPPGTSAQQNMPPQMMGGPIQASAEVAQQGT
MWQGRNDMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQPPYG
SSAPVPPMTRPPPSNYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKA
GPPVPASHIAPAPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRVMMSL
KSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILKEYEV
GDPGQRTLLDPGNFSKVSSPAPMEGGEEEEELLGPKLEEEEEEEVVENDEEIAFSGKDKP
ASENSEEKLVSKFDKLPVKIIQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEHIQ
THFESKTELMPSRPHAPCPPAPRKHVTTGEGTPGTTDQEGPPPDGPPEKRITATMDDMLS
TRSSTLTEDGAKSSEAIKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQDS
LAKRCVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKEEE
QDQGVSCNKVEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVCPS
AEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRFLS
DRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQASLL
HMQNPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSLVSQVIC
DVLFLIGQS
NT seq
6870 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccg
ccgccgccgccctcggagctgaagaaagccgaccagcagcagcgggaggaggcggggggc
gaggcggcggcggcggcagcggccgagcgcggggaaatgaaggcagccgccgggcaggaa
agcgagggtcccgccgtggggcctccgcagccgctgggaaaggagctgcaggacggggcc
gagagcaatgggggtggcggcagcggcggagccggcagcggcggcgggcccggcgcggag
ccggacctgaagaactcaaacgggaacgcgggccctaggcccgccctgaacaataacctc
acggagccgcccggcggcggcggtggcggcagcagcgatggggtgggggcgcctcctcac
tcagccgcggccgccttgccgcccccagcctacggcttcgggcaaccctacggccggagc
ccgtctgccgtcgccgccgccgcggccgccgtcttccaccaacaacatggcggacaacaa
agccctggcctggcagcgctgcagagcggcggcggcgggggcctggagccctacgcgggg
ccccagcagaactcgcacgaccacggcttccccaaccaccagtacaactcctactacccc
aaccgcagcgcctaccccccgcccgccccggcctacgcgctgagctccccgagaggtggc
actccgggctccggcgcggcggcggcggctgccggctccaagccgcctccctcctccagc
gcctccgcctcctcgtcgtcttcgtccttcgctcagcagcgcttcggggccatgggggga
ggcggcccctccgcggccggcgggggaacccctcagcccaccgccacccccaccctcaac
caactgctcacgtcgcccagctctgcccggggctaccagggctaccccggggccgactac
ggcggcgggccccaggacgggggcgctggcaagggcccggcggacatggcctcgcagtgt
tggggggctgcggcggcggcggcagcggcggcggcggcagccgcttcgggaggggcccaa
caaaggagccaccacgcgcccatgagccccgggagcagtggcggcggggggcagccgctc
gcccggacccctcagccatccagtccaatggatcagatgggcaagatgagacctcagcca
tatggcgggactaacccatactcgcagcaacagggacctccgtcaggaccgcagcaagga
catgggtacccagggcagccatatgggtcccagaccccgcagcggtacccgatgaccatg
cagggccgggcgcagagtgccatgggcggcctctcttatacacagcagattcctccttat
ggacaacaaggccccagtgggtatggtcaacagggccagactccatattacaaccagcaa
agtcctcaccctcagcagcagcagccaccctactcccagcaaccaccatcccagacccct
catggccaaccttcatatcagcagcagccgcagtctcagccaccacagctccagccctct
cagcctccatattcccagcagccatcccagcctccacatcagcagtccccgactccatac
ccctcccagcagtccacgacacagcagcacccccagagccagcccccctactcacagcca
caggctcagtctccctaccagcagcagcaacctcagcagccagcaccctcgtcgctctcc
cagcaggctgcatatcctcagccccagtctcagcagtcccagcaaactgcctattcccag
cagcgcttccctccgccacaggagctatctcaagattcatttgggtctcaggcatcctca
gccccctcgatgacctccagtaagggagggcaagaagatatgaacctgagccttcagtca
agaccctccagcttgcctgatctatctggttcaatagatgacctccccatggggacagaa
ggagctctgagtcctggagtgagcacatcagggatttccagcagccaaggagagcagagt
aatccagctcagtctcctttctctcctcatacctcccctcacctgcctggcatccgaggc
ccctccccgtcccctgttggctctcccgccagtgttgctcagtctcgctcaggaccactc
tcgcctgctgcagtgccaggcaaccagatgccacctcggccacccagtggccagtcagac
agcatcatgcatccttccatgaaccaatcaagcattgcccaagatcgaggttatatgcag
aggaacccccagatgccacagtacagttccccccagcctggctcagccttatctccgcgt
cagccttctggtggacagattcacacaggcatgggctcctaccagcagaactccatgggg
agctatggtccccaggggggtcaatatggcccacaaggtggctaccccaggcagccaaac
tataatgccttgcccaatgccaactaccccagtgcaggcatggctggaggcataaacccc
atgggtgccggaggtcagatgcatggacagcctggcatcccaccttacggcacactccct
ccagggaggatgagtcatgcctccatgggcaaccgcccttatggccctaacatggccaat
atgccacctcaggttgggtcagggatgtgtcccccaccagggggcatgaatcggaaaacc
caagaaactgttgccatgcatgttgctgccaactccatccaaaacaggccaccaggctac
cccaatatgaatcaagggggcatgatagcaactgggcctccttatggacaagggattaat
agtatggctggcatgatcaaccctcagggacccccatattccatgggtggaaccatggcc
aacaattctgcagggatggcagccagcccagagatgatgggccttggggatgtcaagtta
actccagccaccaaaatgaacaacaaggcagatgggacacccaagacagaatccaaatcc
aagaaatccagttcttctactacaaccaatgagaagatcaccaagttgtatgagctgggt
ggtgagcctgagaggaagatgtgggtggaccgttatctggccttcactgaggagaaggcc
atgggcatgacaaatctgcctgctgtgggtaggaaacctctggacctctatcgcctctat
gtgtctgtgaaggagattggtggattgactcaggtcaacaagaacaaaaaatggcgggaa
cttgcaacaaacctcaatgtgggcacatcaagcagtgctgccagctccttgaaaaagcag
tatatccagtgtctctatgcctttgagtgcaagattgaacggggagaagatcctccccca
gacatctttgcagctgccgattccaagaagtcccagcccaagatccagcctccctctcct
gcgggatcaggatctatgcaggggccccagactcctcagtcaaccagcagttccatggca
gaaggaggagacttaaagccaccaactccagcatccacaccacacagtcagatccctccc
ttgccaggcatgagcaggagcaattcggttgggatccaggatgcctttaatgatggaagt
gactccacattccagaagcggaattccatgactccaaaccctgggtatcagcccagtatg
aatacctctgacatgatggggcgcatgtcctatgagccaaataaggatccttatggcagc
atgaggaaagctccagggagtgatcccttcatgtcctcagggcagggccccaacggcggg
atgggtgacccctacagccgtgctgccggccctggtcttggaaatgtggcaatgggacca
cgacagcactatccctatggaggtccttatgacagagtgaggacggagcctggaataggg
cctgagggaaacatgggcactggggccccacaaccgaatctcatgccttctaacccagac
tcggggatgtattctcctagccgctaccccccacagcagcagcagcagcagcaacgacat
gattcctatggcaatcagttttccacccaaggcaccccttctggcagccccttccccagc
caacagaccacaatgtatccacagcagcagcagaattacaagcggccaatggatggcaca
tatggccctcctgctaagcggcatgaaggggagatgtacagtgtgccatacagcactggg
caggggcagcctcagcagcagcagttgcccccagcccagccccagcctgccagccagcaa
caagctgcccagccttcccctcagcaagatgtatacaaccagtatggcaatgcctatcct
gccactgccactgctgctactgagcgccgaccagcaggcggcccccagaaccaatttcca
ttccagtttggccgagaccgtgtctctgcaccccctggcaccagtgcccagcaaaacatg
ccaccgcaaatgatgggcggccccatacaggcatcagctgaggttgctcagcaaggcact
atgtggcaggggcgtaatgacatgacctataattatgccaacaggcagagcacgggctct
gccccccagggccccgcctatcatggcgtgaaccgaacagatgaaatgctgcacacagat
cagagggccaatcatgaaggcccatggccttcgcatggcacacgccagcccccatatggt
tcctctgctcccgtgccccccatgacaaggccccctccatctaactaccagcccccacca
agcatgcagaatcacattcctcaggtatcaagccctgctcccctgccccggccaatggag
aaccgtacctctcctagcaagtctccattcctgcactctgggatgaaaatgcagaaggca
ggtcccccagtgcctgcctcacacatagcacctgcccctgtgcagccccccatgattcgg
cgggatatcaccttcccacctggctctgttgaagccacacagcctgtgttgaagcagagg
aggcggctcacaatgaaagacattggaaccccggaggcatggcgggtaatgatgtccctc
aagtctggtctcctggctgagagcacatgggcattagataccattaacatcttgctatat
gatgacaacagcatcatgaccttcaacctcagtcagctcccagggttgctagagctcctt
gtagaatatttccgacgatgcctgattgagatctttggcattttaaaggagtatgaggtg
ggtgacccaggacagaggacgctactggatcctgggaatttcagcaaggtgtctagtcca
gctcccatggagggtggggaagaagaagaagaacttctaggtcctaaactagaagaggaa
gaagaagaagaagtagttgaaaatgatgaggagatagccttttcaggcaaggacaagcca
gcttcagagaatagtgaggagaagctggtcagtaagtttgacaagcttccagtaaagatc
atacagaagaatgacccatttgtggtggactgctcagataagcttgggcgtgtgcaggag
tttgacagtggcctgctgcactggcggattggtggtggggacaccactgagcatatccag
acccactttgagagcaagacagagctgatgccttcccggcctcatgcaccctgcccacca
gctccccggaagcatgtgacaacaggagagggtacgccagggacaacagaccaggagggg
cccccacctgatggacctccagaaaaacggatcacagcgactatggatgacatgttgtct
acccggtctagcaccttgactgaggatggagctaagagttcagaggccatcaaggagagc
agcaagtttccatttggcattagcccagcccagagccaccggaacatcaagatcctagag
gacgaaccccacagtaaggatgagaccccactgtgtacccttctggactggcaggattct
cttgccaagcgctgcgtctgtgtctccaataccattcgaagcctgtcatttgtgccaggc
aatgactttgagatgtccaaacacccagggctgctgcttatcctgggcaagctgatcttg
ctgcaccacaagcacccagaacggaagcaggcaccactaacttatgagaaggaggaggaa
caggaccaaggggtgagctgcaacaaagtggagtggtggtgggactgcttggagatgctc
cgggaaaacaccttggttacactcgccaacatctcggggcagttggacctatccccatac
cctgagagcatttgcctgcctgtcctggacggactcctacactgggcagtttgcccttca
gctgaagcccaggaccccttctctaccctgggccccaatgccgtcctttccccgcagaga
ctggtcttggaaaccctcagcaagctcagcatccaggacaacaatgtggacctgatactg
gccacacctcccttcagccgcctggagaagttgtatagcactatggtgcgcttcctcagt
gaccgaaagaacccggtgtgccgggagatggctgtggtactgctggccaacctggctcag
ggggacagcctggcagcccgcgccattgcagtgcagaagggcagtatcggcaacctcctg
ggcttcctagaggacagccttgccgccacacagttccagcagagccaggccagcctcctc
cacatgcagaacccaccctttgagccaactagtgtggacatgatgcggcgggctgcccgc
gcactgcttgccctggccaaggtggatgagaaccactcagagtttactctgtacgaatca
cggctgttggacatctcagtatcaccattgatgaactcactggtttcacaagtcatttgt
gatgtactgtttttgattggccagtcatga
DBGET
integrated database retrieval system
