Callithrix jacchus (white-tufted-ear marmoset): 100386876
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Entry
100386876 CDS
T03264
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04140
Autophagy - animal
cjc04148
Efferocytosis
cjc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100386876 (VPS16)
04148 Efferocytosis
100386876 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100386876 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjc04131
]
100386876 (VPS16)
Membrane trafficking [BR:
cjc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100386876 (VPS16)
Hops complex
100386876 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
100386876
NCBI-ProteinID:
XP_035158695
Ensembl:
ENSCJAG00000021065
LinkDB
All DBs
Position
5:8255798..8278542
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AA seq
878 aa
AA seq
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MAAAAASPRDPHGRKRKCRPRARSGWVSPRRFPAAVCTSMDCYTANWNPLGDSAFYRKYE
LYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAASVRPVLDIYSASGMPLASLLW
KSGPVVSLGWSAEEELLCVQEDGAVLVYGLHGDFRRHFSMGNEVLQNRVLDARVFHTEFG
SGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCWTVLCQDRVAHILLAVGPDLYL
LDHAACSAVTLPGLAPGVSSFLQMAVSFTYRHLALFTDTGYIWMGTASLKEKLCEFNCNI
RAAPKQMVWCSRPRSKERAVVVAWERRLMVVGDASESIQFVLDEDSYLVPELDGVRIFSR
STHEFLHEVPAASEEIFKIASMAPGALLLEAQKEYEKESQKADEYLREIQELGQLTQAVQ
QCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFVHMCQDLRVLNAVRDYHIGIPLT
YSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDE
DVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLA
LSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYN
QDDNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQR
RLEDELGGQFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWE
ELEKFSKSKKSPIGYLPFVEICIKQHNKYEAKKYASRVGPEQKVKALLLVGDVAQAADVA
IEHRNEAELSLVLSHCTGATDGATADKIQRARAQAQKK
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggcctcgccacgtgacccgcacgggcggaagcggaagtgccggcct
agagcccgctctgggtgggtgtcccctcggcgcttccctgctgctgtgtgcaccagcatg
gactgttacacggcgaactggaacccgctcggggactctgccttttaccggaaatatgag
ctgtacagcatggactgggacctgaaggaagaactcagggattgcctggtggctgctgca
ccctatgggggccccattgcactactgaggaacccctggcggaaggagaaagctgccagt
gtaaggccagtgctcgatatatactctgcttctggcatgcctctggccagcctgctgtgg
aagagtggacccgtggtatccctgggctggtctgctgaggaggagctgctctgtgtgcag
gaagatggtgctgtactggtttatgggcttcatggtgacttccggagacacttcagcatg
ggcaatgaagtacttcagaaccgggttctggacgcccgggtatttcacactgaatttggt
tctggagtggccatcctcacaggggcccaccgcttcaccctcagtgccaatgtgggtgac
ctcaaactccgccggatgccagaggtgccaggtctgcaaagtgcaccttcctgctggact
gtactatgccaggaccgagtggcacacattcttctggctgtggggcctgacctatacctc
ctggaccatgcagcttgctctgcagtgacactccctggcctggccccaggagtaagcagc
ttcctacagatggctgtctccttcacctaccgacacctggcactcttcacagacacaggc
tacatctggatggggacggcatcactcaaggagaagctgtgtgagttcaactgcaacatc
cgggcagctccaaagcagatggtctggtgcagccgtcctcgtagcaaggagagggccgta
gtggtggcctgggagaggcggctgatggtggtgggcgatgcatccgagagcatccagttt
gtgctggacgaggactcctacctggtgcctgagctcgatggtgtccgcatcttctcccgc
agcacccacgagttcctgcatgaggttccagcggccagcgaggagatcttcaaaattgcc
tcaatggcccccggggctctgctcctggaggctcagaaggagtatgagaaagagagccag
aaggcagatgagtacctgagggagatccaggagctgggccagctgacccaggctgtgcag
cagtgcattgaggcagcaggacatgagcaccagccagatatgcagaagagtctgctcagg
gcggcctccttcggaaagtgcttcctggacagatttccacccgacagcttcgtgcacatg
tgtcaagacctgcgtgtgctcaatgccgttcgggactatcacattgggatcccactcact
tacagccaatacaagcagctcaccatccaggtgctgctggacaggcttgtgttgcggaga
ctttaccccctggccatccagatatgcgagtacttgcgccttcctgaagtacagggcgtc
agcaggatcctggcccattgggcctgctacaaggtgcaacagaaggatgtctcagatgag
gatgtggctcgagccattaaccagaagctgggggacacgcctggtgtctcttactccgac
attgctgcacgagcctatggctgtggccgcacggagctggccatcaagctgctggagtat
gagccacgctcaggggagcaggtaccccttctcctaaagatgaagaggagcaaactggca
ctaagcaaggccatcgagagcggggacactgacctggtgttcacggtgttgctgcacctg
aagaatgagctgaaccgaggagattttttcatgactcttcggaatcagcccatggccctg
agtttgtaccgacagttctgtaagcatcaggagctagagacgctgaaggacctttacaat
caggatgacaatcaccaggaattgggcagcttccacatccgagccagctatgctgcagaa
gagcggattgagggccgagtagcagctcttcagacagccgctgatgccttctacaaggcc
aagaatgaatttgcagccaaggctacagaggatcaaatgcggctcctacggctgcagcga
cgcctagaagacgagctggggggccagttcctagacctgtctctacatgacactgttacc
accctcattcttggcggtcacaacaagcgtgcagagcagctggcacgtgacttccgcatc
cctgacaagaggctctggtggctgaagctgactgccctggcagatttggaagactgggaa
gagctagagaagttttccaagagcaagaaatcacccattggctacctgccttttgtggag
atctgcatcaaacaacacaacaaatacgaagccaagaagtacgcttcccgtgtgggtcct
gagcagaaggtcaaggctttgcttcttgttggtgatgtggctcaggctgcagacgtggcc
atcgaacaccggaacgaggctgagctgagcctcgtattgtcccactgcacaggagccaca
gatggggctacggctgataagattcaacgggccagggcacaagcccagaagaagtga
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