Callithrix jacchus (white-tufted-ear marmoset): 100387306
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Entry
100387306 CDS
T03264
Symbol
FOCAD
Name
(RefSeq) focadhesin isoform X1
KO
K27498
focadhesin
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100387306 (FOCAD)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100387306 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
100387306
NCBI-ProteinID:
XP_054112593
Ensembl:
ENSCJAG00000008887
LinkDB
All DBs
Position
1:124443446..124742774
Genome browser
AA seq
1817 aa
AA seq
DB search
MQRLMETAYIHVREAKMSDDIRKRFEFPNSLIQSQAVGHLLAAVLKENGFSEKIHQSTDQ
TPALNLLWEKCCSDDVVVRTACCEGLVALVAQDHAEFSYVLNGVLNLIPSTRNTHGLIKA
IMKLLQMQALKEGQGGEKNIQNIYTIRNHPQPLITVLEHRPDCWPVFLQQLTAFFQQCSE
RSEISCIQIMAPFLWYLYCEPSQLQEYAKLRLTLLKVLLQPRVLCDKEQPSILEQQILQL
CCDMVPCLQIKDLMQTTEAMLFIEEVYLSLLRHPAFWKTQLIQLTLQLLCVCEVSLKITG
ECSSLIHLLEKSVELLKEDFPVELAIIGIALLLLQTPACQQKPLLNLALELLSVTEDQKI
PKSSLLLVMPILQILSSTALEDCISMNEEGPSRQQLALNLLEMIQQECYRDDHPKLSYKL
VCPVTSMYGSIFTTWRILEVMRDVSAARDWLASVESLLPITTVMPVPAFLLLAHLLVEDK
GQNLHQILNVTTELAQADSSQVPNLIPVLMFKLGRPLEPILYNDILYTLPKLGVHKVCVG
QILRVIQLLGTTPRLRAVTLRLLTSLWEKQDRVYPELQRSMAMSDIPSLSVGKEVQWEKL
IAKAASIRDICKQRPYQHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCI
RSTWNALSPKLSCDTRPLILKTLSELFSLVPSLTVNTTEYENFKVQVLSFLWTHTQNKDP
IVVNAAYRSLSHFSAGEHTILHLPEKIRPEIPIPEELGDDEDEEDVNLSVPGSCYLKLLS
LTNSSVLPALEEFFTSLVKQEMVNMPRGIYHSALKGGARTDQGKTVAGIPNFILKMYETN
KQPGLKPGLAGGMLFCYDVSTYQSKDGKPLHRLMASRGRSFKQTSLALVHEVHIQLSEWH
RAIFLPQAWLAYMNRAYHAILQGRLGELELQLKHGKEGPEEVQYKKSTAWLWIRDMLTDE
ITKTAAKESPVVKGNALLALSSLAVVVCRHEASLSSDSDGLLEVQPNFLSMKDWISMVLD
TLLVIVDSHYQPRGQLLSWFYYKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEE
ILNMLTARLPGKPSADESQAVQIHMGLALGMFLSRLCEEKLSDISGQEMNLLLMKCLDAL
ENCCFDTSLEYNTGCILGVGLVLSLMSHSSQTQSRIHVAASLRKLSAYLDDSGSQSRTFQ
EVLAYTLSCVCTSAFNAGIIEAPEAEDVMYKLRMLAENSQQTSGFALALGNIVHGLSVCG
HGKAEDLGSKLLPTWIRIVLTEGSPTMLCLAALHGMVALVGSEGDVMQLKSEDIQTSHFQ
GRLNEVIRTLTQVISVSGVIGLQSNAIWLLGHLHLSTLSSSQSRTSVPTDYSYLPESSFI
GAAIGFFITGGKKGPESVPPSLLKVVMKPIATVGESYQYPPVNWAALLSPLMRLNFGEEI
QQLCLEIMVTQAQSSQNAAALLGLWVTPPLIHSLSLDIKRYLLVSAPLWLKHVSDEQILG
FVENLMLAVFKAASPLGNPELCPSALQGLSQAMKLPSPAHHLWSLLCEATGKIFDLLPNK
IRRKDLELYIGIAKCLSEMTDDDATRVTQVTKSNIEKAAFVKLYLVSQGRFPLMNLTDML
SVAVQHHEKELLAWMILQSLYQARIVSQANTGVLKRMEWLLELMGYIRNVAYQSTSVQNM
ALDEALDFLLLIFATAVVAWADHAAPLLLGLSASWLPWHQENGLAGPAPSFLGRSPMHRV
TLQEVLTLLPSSMPLMLQKEPWKEQTQKFIDWIFSIMESPEEALSAKSRDLLKATLLSLR
VLPEFKKKAVWTRAYGW
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaggcttatggaaactgcgtacatacatgtaagagaagcaaaaatgtcagatgat
atcaggaaaaggtttgaatttccaaattctcttatccaatcacaggctgtgggtcatctt
cttgctgcagtcctaaaggaaaatggtttttcagaaaagattcaccaatctacagatcag
actcctgctttgaacttgctgtgggagaagtgctgcagtgacgatgtagtggttcgaaca
gcctgctgtgaaggtctcgtggcacttgttgctcaggatcatgcagagttcagctatgtt
ctcaatggggtactcaacctgattccatcaaccagaaatacacatggcttgataaaagcc
attatgaaattactacaaatgcaagctcttaaggaaggacaaggtggggagaagaatatt
cagaatatatatactattagaaatcatcctcagcctttgatcactgtgcttgaacacaga
cctgattgctggccggtatttttgcagcagctgacagctttcttccagcagtgctctgaa
aggtcagaaatttcatgcattcaaataatggcaccatttctgtggtatctgtattgtgaa
ccatctcagttacaagaatatgctaaacttcgactaaccctgctgaaagtcttacttcaa
ccccgggttctttgtgacaaagaacaaccgtcaatactggaacagcagatacttcaactt
tgttgtgacatggttccatgtttgcagataaaagatttgatgcagacaacagaagcaatg
ctgtttattgaggaagtatatttaagccttttgcgtcatcctgctttctggaaaactcag
cttatccaactgactcttcagctgctgtgtgtctgtgaagtcagcttaaagataactgga
gaatgttcatctttaattcaccttttagagaaaagtgttgaactcctgaaggaggatttt
cctgttgaactggccataattggaatagctttactacttctacagactccagcatgtcag
cagaagccactcttaaatctagctttggagctcctctctgttactgaggatcagaaaatc
ccaaagtcctctctgctgctagtgatgccaattctgcagatactatcttctactgccttg
gaagactgtatatctatgaatgaagaaggtccctctaggcagcagttggctctaaacctc
ttagaaatgatacagcaggaatgttacagagacgaccacccaaagctctcctacaagctt
gtgtgccctgtaaccagtatgtatggttcaatatttacaacctggaggattcttgaagta
atgagagatgtgtctgctgcaagggactggttggcttcagtagagtccttgcttccaatt
actactgtgatgcctgtacctgcttttcttctgctggctcacctccttgttgaagacaaa
ggacaaaatcttcaccaaatactgaatgtcactacagaattagcccaagcagattcgtcc
caggtgccaaatctgattccagttttgatgttcaaattaggaagaccactggaacctata
ttatataatgatatattgtatactttacctaagcttggtgttcacaaggtgtgtgtagga
cagattctacgagtaatacaactgcttggaaccaccccacgactaagagctgtcactttg
cgcttgctgacatctttgtgggaaaagcaggaccgagtctatcctgaactgcagcgttcc
atggccatgtctgatataccttctctttcggtgggcaaggaagtccaatgggagaaattg
attgcaaaagcagcctcaatcagagatatatgtaagcagaggccatatcagcatggtgca
gatatgttagcagctatttctcaggtgttgaatgaatgcaccaagcctgatcaagctact
ccagcagcattggtattacagggtcttcatgcactctgtcaagctgaggttgtttgcatt
cgctccacttggaatgctctctctccaaagctgagttgtgacacaagacctctcattctg
aagaccctcagtgaactgttttctctggttccttccttaacagtcaatacaactgaatat
gagaattttaaagttcaagtcctcagcttcctatggactcatactcaaaacaaggaccca
attgtagtaaatgccgcatatagatccctgtcccactttagtgcgggagaacacaccatt
cttcatctgcctgaaaagataagaccagaaattcccattcctgaagagttaggtgatgat
gaagatgaggaggatgtgaatctttcagttcctggctcttgctatctcaaactattgtca
cttactaactcttctgttttaccagctttggaggaattttttacatcacttgtgaagcaa
gaaatggtgaatatgcctcgtgggatatatcactctgcattaaaaggaggtgcccgcaca
gaccaaggaaagactgtagcaggaatccccaattttatattgaaaatgtatgaaacaaac
aagcaaccaggattgaaacctggccttgcaggtggtatgttattttgctatgatgtttcg
acgtatcagagtaaagatggaaaaccattgcatagactgatggccagtagagggcgaagt
ttcaagcagacttcacttgctcttgtacatgaggttcatatccagctttcggagtggcac
cgtgcgatttttcttccacaggcctggcttgcgtatatgaatcgagcttatcatgccatt
ttacagggaagactgggagagctggagttacagttaaaacatggaaaagaaggacctgag
gaggtgcagtacaaaaaaagcacagcctggctctggattagagacatgctgactgatgag
atcaccaagacagctgcaaaggagagtccagtagtgaaaggcaatgcgctgttagcccta
agcagccttgcagtcgtcgtatgtagacatgaagccagcctctcctcagactctgatggg
ctcctggaggttcaacctaatttcctttcaatgaaagattggatttccatggtacttgat
actctcttggtcattgtggatagccattaccaacccagagggcaacttctctcctggttt
tattataagtcctattctggtgaaaacacagctagtgccattgcccgttctgctgccgcc
acggctttgtctctccttgtgccagttttcattatctcttgcaaagagaaggttgaggaa
atcctgaacatgctgactgccaggttacctgggaaaccaagtgctgatgagtctcaagcc
gtgcaaatccacatgggccttgctttagggatgtttctctctcgcttgtgtgaagagaaa
ctcagtgatatatctggccaagaaatgaaccttcttctgatgaagtgtttggatgccctg
gaaaattgctgctttgacactagtcttgaatacaacacgggctgtatattgggagttgga
cttgttctgtccctcatgagccacagcagccaaacgcagtcccgcattcatgtggcagca
tcgcttcggaagctgtctgcgtacctagatgacagtgggagccaaagcagaacgtttcag
gaggtccttgcctacacacttagctgtgtatgtacctcagcattcaatgctggaattatt
gaagctccagaagctgaggatgttatgtacaaacttcgaatgttagcagagaacagccag
cagacttcaggttttgccctggcgttaggaaacatagttcatggattgtctgtgtgtgga
catggaaaagctgaagacttgggcagcaaactactccctacctggatcagaattgttcta
acagagggctctcccacaatgctttgtctcgcagctcttcatggcatggtggccttggta
ggctctgaaggggatgtaatgcagctgaaatcagaagacatccagacctctcattttcaa
ggcagacttaatgaagtcattagaaccttaactcaggtcatcagtgtctctggggtgatt
ggtctccagtcaaatgcaatctggcttcttggacatcttcatctgtctactctgtcctca
agtcaaagtagaacctctgttcctactgactatagctatttgcctgaaagcagttttatt
ggagcagccattggcttcttcattacaggaggaaaaaaaggtcctgaatctgtgcctcct
tcccttcttaaagtagtgatgaaacccatagccactgttggagaaagctaccagtatcct
cctgtgaactgggctgcacttctctctccacttatgaggctgaattttggtgaagagatc
cagcagttgtgccttgaaattatggtgacccaggcacagtcatcccagaatgcagctgca
cttttgggcttgtgggtgacgccaccactgatccacagtctgagtctggatatcaagaga
tatctcctggtatctgcaccactctggttaaaacacgtctctgatgaacagatcctgggt
tttgttgaaaatttaatgctagcagtttttaaagcagcttccccacttggaaatcctgag
ctgtgcccaagtgccttacagggtctgagccaggccatgaaactacccagccctgcccac
cacctctggagtctgctctgtgaagctactgggaaaatttttgatctcctgccaaataag
attcggagaaaggatctagagctatatattggcatagcaaaatgcctctcagaaatgaca
gatgacgatgccactcgggtcacccaggttactaagagcaacatagaaaaggctgccttt
gtcaaactgtacttagtctctcaaggacgattccccttgatgaacctgactgatatgctg
agtgttgctgtgcagcaccatgagaaagagctgctggcctggatgattctgcagagctta
taccaggcacggattgtgagccaggccaacacgggcgttttgaagagaatggagtggctc
ttggaactgatgggttatattagaaacgttgcttaccagtcaacatccgttcagaatatg
gctcttgacgaggctttggacttcttgttgctgatatttgcaaccgcagtggttgcctgg
gctgaccacgctgcccctctcctcctcggtctcagtgccagttggttgccatggcatcag
gagaatgggctggctgggccagcaccaagcttccttggcaggagtccaatgcacagggtc
actctgcaggaggttctcactctccttcccagtagcatgcctctgatgctgcagaaagag
ccatggaaggaacagacccagaagtttattgactggatattcagcatcatggaaagccct
gaagaagccctctcagcaaagtccagggatcttttgaaagccaccctgttgtccttgaga
gttctaccagagtttaagaagaaagctgtatggaccagagcatatggttggtga
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