Callithrix jacchus (white-tufted-ear marmoset): 100388456
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Entry
100388456 CDS
T03264
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04140
Autophagy - animal
cjc04142
Lysosome biogenesis
cjc04145
Phagocytosis
cjc04148
Efferocytosis
cjc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
100388456 (VPS39)
04142 Lysosome biogenesis
100388456 (VPS39)
04140 Autophagy - animal
100388456 (VPS39)
04148 Efferocytosis
100388456 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100388456 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjc04131
]
100388456 (VPS39)
Membrane trafficking [BR:
cjc04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100388456 (VPS39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
LIF1_N
VPS18_solenoid_2nd
DUF4145
KCTD11_21_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
100388456
NCBI-ProteinID:
XP_002763992
UniProt:
H9KW00
LinkDB
All DBs
Position
10:complement(25480723..25548124)
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AA seq
886 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCA
LNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASN
HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLA
IPYLEHIIHVWEETGSRFHNCLIQLYCEKVQVLMKEYLLSFPAGKIPVPAGEEEGELGEY
RQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAE
EYCHKHYDQNKDGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPKANLQAALQVLELHHS
KLDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgctttcgagccagtgccgatcctagaaaagctgcctctgcaaatcgactgt
ctggctgcttgggaggaatggcttcttgtgggaaccaaacaaggacatcttcttctctat
aggattcggaaggacgttgtgccagcagatgtagcgtcacctgaaagtggcagttgcaac
aggtttgaagtgacactagagaaatccaataagaacttctccaaaaagattcagcagatc
catgtggtttcccagtttaagattctggtcagcttgctagaaaataacatttatgtccat
gacctattgacatttcaacaaatcactacggtttcaaaggcaaaaggagcatcactgttt
acatgcgacctccagcatacagagactggtgaggaggtgttacggatgtgtgtggcagtg
aaaaagaagctgcagctctatttctggaaggacagggaatttcatgaattgcagggggac
tttagtgtaccagatgtgcccaagtccatggcgtggtgtgaaaattctatatgtgtgggt
ttcaagagagactactacctaataagggtggatggaaaggggtccatcaaagagctcttt
ccaacagggaaacagctggagcccttagttgcacctctggctgatggaaaagtggctgtg
ggccaggatgatctcactgtggtactcaatgaggaagggatctgcacacagaaatgtgcc
ctgaactggacggacataccagtggccatggagcaccagcctccctacatcatcgcagta
ttgcctcgatatgtggagatccgaacatttgaaccaaggcttctggtccaaagcattgaa
ttgcaaaggcctcgtttcattacctcaggaggatcaaacattatctatgtggctagcaat
cattttgtttggagactcatccctgtccccatggcaacccaaatccaacagcttctccag
gacaagcaatttgaattggctctgcagcttgcagaaatgaaagatgattccgacagtgaa
aagcagcaacaaattcatcacatcaagaacttgtatgccttcaacctcttctgccagaag
cgttttgatgagtccatgcaggtctttgctaaacttggcacagatcccacccatgtgatg
ggcctgtaccctgacctgctgcccacagactacaggaagcagttgcagtatcccaaccca
ttgcctgtgctctcgggggctgaactggagaaggcgcacttagctctaattgactacctg
acacagaaacgaagtcaactggtaaagaagctgaatgactctgatcaccagtcaagcacc
tccccactcatggaaggcactcccaccatcaaatccaagaagaagctgctacaaatcatc
gacaccaccctgctcaagtgctatctccatacgaatgtggccctggtggcccccttgcta
cgcctggagaacaatcactgccacatcgaggagagcgagcacgtgctgaagaaagctcac
aagtacagtgagctgatcattctgtatgagaagaaggggctccacgagaaagctctgcag
gtgcttgtggaccagtccaagaaagccaactcccctctgaaaggccacgagaggacagtg
cagtatctgcagcatctgggcacagaaaacctgcatttgattttctcctactcagtgtgg
gtgctgagagacttcccagaagacggcctgaagatatttactgaagatctcccggaggtg
gagtctctgccacgtgatcgagtcctcggcttcttaatagagaattttaagggtctggct
attccttatctggaacacatcatccacgtttgggaggagacaggctctcggttccacaac
tgcctgatccagctgtactgtgagaaggtgcaagttctgatgaaggagtatctcctgtcc
ttccctgcaggcaaaatcccagtcccagctggagaggaagagggtgagctgggagaatac
cggcaaaagctcctcatgttcttggagatttccagctactatgatccaggccggctcatc
tgtgattttccctttgatggcctcttagaagaacgagctctcctgttggggcgcatgggg
aaacatgaacaagctcttttcatttatgtccacatcttgaaggatacaaggatggctgag
gagtactgccacaaacactatgaccaaaataaagatggcaacaaagatgtatatctgtcc
ctgcttcggatgtacctgtcaccccccagcattcactgcctggggccaatcaagctggaa
ctgctggagccaaaggccaacctccaggctgccctgcaggtccttgagctgcaccacagc
aaactggacaccaccaaggctctcaaccttctgccagcaaacactcagatcaatgacata
cgaatcttcctggaaaaggtcttggaagaaaatgcacaaaagaaacggttcaatcaagtg
ctcaagaaccttctccatgcagagttcctgagggtccaggaagagcggattttacaccag
caggtgaagtgcatcatcacagaggagaaggtgtgcatggtgtgtaagaagaagattggg
aacagtgcatttgcaagataccctaatggagtggtcgtgcactacttctgttccaaagag
gtaaacccagctgacacttga
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integrated database retrieval system
