Callithrix jacchus (white-tufted-ear marmoset): 100388797
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Entry
100388797 CDS
T03264
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100388797 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100388797 (PNLDC1)
Enzymes [BR:
cjc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100388797 (PNLDC1)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100388797 (PNLDC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100388797
NCBI-ProteinID:
XP_035152990
Ensembl:
ENSCJAG00000011865
UniProt:
F6RUP1
LinkDB
All DBs
Position
4:162773988..162797182
Genome browser
AA seq
530 aa
AA seq
DB search
MDVGAKEFEESLPLLQELLHESDFVGLDIEFTGLRSNLSGPQISLFDLPSEWYLKTRQSV
QQFTICQIGLSMFSALEGEENKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGFN
YNKFLKNGIPYMNEEQEKKIRHDILSGNWKVRSSLDKDQIKVVIDEVTRWLDLAKEGDWM
TLPGIVGFQAYEVQLVLRQALHNIWTVLKDDGVIVKKVSKQHRWYLQSTSCDRESCWKEN
ILLSAKGFSVFFHMLVKAQKPLVGHNMMMDLLYLHEKFFRPLPESYDQFKQNIHSLFPVL
IDTKNVTKDIWKEMNFPRVSSLSEVYEVLNSDLNPTKNSGPEIVHAISCEKYVETKCPHE
AAYDAFLCGSVLLKVAHLILQKVHGIDPIPESTFPQYLDVLAPYVNQVNLIRAGVPKINF
SGPDYPSIRPPILILSVKRWPGVSEQQVYHKFQNLCKFDVRRLTRSQFLLLTNKFKDARN
ILKEYRGHPTLHISLYRYWRHSPDVNCLLQVCGIMTAWAVLAFILGRSGP
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggtgccaaggagttcgaggagagcctccctctgctgcaagagcttctccat
gagtcggacttcgtgggtctggacatagaattcacgggccttcgttctaacctgtctgga
ccccagatcagtctttttgatttgccgtcggagtggtatctaaagacccgccagagcgtt
cagcaatttacaatctgtcagatcggattgtctatgttctccgctcttgaaggagaagaa
aacaagtacgtagcccattcgtgtaacttctttctcttccctacaacatttgggattttg
gactcagaattctctttccaggcttccagtgttcagtttttgaatcagtatggcttcaac
tataacaagtttctcaaaaacggaatcccatatatgaatgaagaacaggagaagaagatt
agacatgatatcctgagtgggaactggaaagttcgcagctctctggataaagaccaaatc
aaggtggtgattgatgaagtgactcgatggctagacctggccaaggaaggcgactggatg
actcttcctgggattgttggcttccaggcctatgaggtgcagctggtgctgcggcaggcc
ctccacaacatctggacggtgctgaaagatgacggggtcatagtgaagaaagtgagtaag
caacatcgttggtatcttcagagcacctcttgtgaccgagagagctgttggaaggaaaat
attcttctctctgcaaagggtttttctgtctttttccatatgctggtgaaagcccagaag
cccttagtgggacataatatgatgatggacctgctgtacctgcatgagaagttcttcaga
cccctgccagaaagctatgatcaatttaagcagaatatccacagcctgtttcctgttctc
attgataccaagaatgtaacaaaggatatctggaaggagatgaatttcccgagggtgtca
agtctttccgaagtctatgaagtcctgaacagtgacttgaatccaaccaagaattctgga
ccagagattgttcatgcaatcagctgtgagaaatatgttgagacaaagtgcccccatgaa
gctgcatatgatgccttcctttgtgggtcagttcttttgaaagtggcacacttaatccta
cagaaagtgcacggcattgaccccattcccgagtcgacctttcctcagtacctcgatgtg
ctggctccttacgtgaaccaagtgaacctcatccgagcgggggtcccgaagattaatttt
tctggtccagattatccaagtatccgacctcccatcctcatcctcagcgtcaaaaggtgg
cctggggtcagcgagcagcaagtctaccataagtttcagaatctctgcaagtttgatgtc
aggcgtctcacacgaagccagttcttactcctgaccaataagtttaaggacgcacggaac
atcctgaaggagtaccggggccacccaaccctgcacatctccctgtaccgctactggagg
cactccccagacgtcaactgcctgctgcaagtctgtggcatcatgacggcctgggctgtt
ctcgccttcatcctcggaagatctggtccctga
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