Callithrix jacchus (white-tufted-ear marmoset): 100389011
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Entry
100389011 CDS
T03264
Symbol
DHX36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100389011 (DHX36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100389011 (DHX36)
03012 Translation factors [BR:
cjc03012
]
100389011 (DHX36)
Enzymes [BR:
cjc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100389011 (DHX36)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100389011 (DHX36)
Translation factors [BR:
cjc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
100389011 (DHX36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
HA2_C
Helicase_C
HA2_N
AAA_22
AAA_19
nSTAND3
PhoH
AAA_14
ATPase
AAA_23
DUF6782
NPHP3_N
RsgA_GTPase
AAA_34
Motif
Other DBs
NCBI-GeneID:
100389011
NCBI-ProteinID:
XP_035133701
Ensembl:
ENSCJAG00000000986
UniProt:
F6XRR2
LinkDB
All DBs
Position
17:24149108..24197780
Genome browser
AA seq
1010 aa
AA seq
DB search
MSYDYHQNWGRDGGPRSSGGGCGGGPAGGHRGSRGSGGGGGGGGGGGGRGGRDRHPGHLK
GREIGLWYARKQGQKNKEAERQERAVVHMDERREEQIVQLLNSVQAKNDKEPEAQISWFA
PEDHGYGTEVSTKNTPRSEKKLDNQEMKLINQEKKVFRIRNKSYIDRDSEYLLQENEPDG
TLDQQLLEDLQKKKNDLRYIEMQHFREKLPSYGMQKELVNLIDNHQVTVISGETGCGKTT
QVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVAAERAESCGNGNSTGYQIRLQS
RLPRKQGSILYCTTGIILQWLQSDPHLSSVSHIVLDEIHERNLQSDVLMTVVKDLLNFRS
DLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEKIRYVPEQKEQRSQF
KRGFMQGHVNRQEKEEKDAIYKERWPDYVRELRRRYSSSTVDVIEMMDDDKVDLNLIVAL
IRYIVLEEEDGAILVFLPGWDNISTLHDLLMSQVMFKSDKFLIIPLHSLMPTVNQTQVFK
RTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSQANAKQ
RKGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRL
MDPPSNEAVLLSIRHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPV
LTIAASLSFKDPFVIPLGKEKIADARRKELAKDTRSDHLTVVNAFKGWEEARRRGFRYEK
DYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRNPKDPESNINSDNEKIIKAVICAG
LYPKVAKIRPNLGKKRKMVKVYTKTDGLVAIHPKSVNVEQTDFHYNWLIYHLKMRTSSIY
LYDCTEISPYCLLFFGGDISIQKDNDQETIAVDEWIIFQSPARIAHLVKELRKELDILLQ
EKIENPHPVDWNDTKSRDCAVLSAIIDLIKTQEKATPRNLPPRLQDGYYS
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atgagctatgactaccatcagaactggggccgtgatgggggaccccgcagctccggtggg
ggctgtggagggggtcctgcagggggtcaccgagggagccgaggctccggaggaggtggc
ggcggcggcggaggtgggggtggtcgaggcggcagggataggcatcccgggcacctgaaa
ggccgcgaaatcggcttgtggtacgcaagaaaacagggacagaagaacaaggaagcggag
aggcaagagagagctgtagtgcacatggatgaacgacgagaagaacaaattgtgcagcta
ctgaattccgttcaagcaaagaatgataaagagccggaagcacagatatcctggtttgct
cctgaggatcatggatatggtactgaagtttctactaagaacacaccacgctcagagaag
aaacttgacaaccaggaaatgaagttgataaaccaagaaaaaaaagtgtttagaatcagg
aacaaatcctatattgatcgagattctgagtatctcttgcaagaaaatgaaccagatgga
actttagaccaacaattattggaagatttacaaaagaaaaaaaatgaccttcggtatatt
gaaatgcagcatttcagagaaaagctgccttcatatggaatgcaaaaggaattggtaaat
ttaattgataaccatcaagtaacagtaataagtggtgaaactggttgtggcaaaaccact
caagttactcagttcattttggataactacattgaaagaggaaaaggatctgcttgcagg
atagtttgtactcagccaagaagaattagtgccatttcagttgcagaaagagtggctgca
gaaagggcagaatcttgtggcaacggtaatagcactggatatcaaattcgtctccagagt
cggttgccaaggaaacagggttctatcttatactgcactacaggaattatccttcagtgg
ctccagtcagacccgcatttgtccagtgttagtcatatcgtacttgatgaaatccatgaa
agaaatctgcagtcagatgttttaatgactgttgttaaagatcttctcaattttcgatct
gacttgaaagtaatattgatgagtgcaacgttgaatgcagagaagttttcagaatatttt
ggtaactgtccaatgatacatatacctggttttacctttccggttgtggaatatcttttg
gaagatataattgaaaaaataagatatgttccagaacaaaaagaacagcgatcccagttt
aagaggggtttcatgcaagggcatgtaaatcgacaagaaaaagaagagaaagacgcaata
tataaagaacgttggccagattatgtaagggaactgcgaagaaggtattcttcaagtact
gtagatgttattgaaatgatggatgatgataaagttgatctgaatttgattgttgccctt
atccgatacattgttttggaagaagaggatggtgcgatactggtctttctgccaggctgg
gacaatatcagcactttacatgatctcttgatgtcacaagtaatgtttaaatcagataaa
tttttaattatacctttacattcactgatgcctacagttaaccagacacaggtgtttaaa
agaactcctcctggtgttcggaaaatagtaattgctaccaacattgcagagactagcatt
accatagatgatgtcgtttatgtgatagatggaggaaaaataaaagagacacattttgat
actcagaacaatatcagtacaatgtccgctgagtgggttagtcaagctaatgccaaacag
aggaaaggtcgagctggaagagttcaacctggacattgttatcatctgtataatggtctt
agagcaagtcttctagatgactatcaactgccagaaattttgagaactcctttggaagaa
ctttgtttacaaataaagattttaaggctaggtggaattgcttattttctgagtaggtta
atggatcccccatcaaatgaggcagtgttgctctccataagacacctgatggagctgaat
gctttggataaacaggaagaattgacacctcttggagtccacttggcacgattacccgtt
gagccacatattggaaaaatgattctttttggagctctgttctgctgtttagacccagta
ctcactattgctgctagtctcagtttcaaagatccatttgtcattccattgggaaaagaa
aagattgcagatgcaagaagaaaggaattggcaaaggatactagaagtgatcacttaaca
gttgtgaatgcatttaagggctgggaagaagctaggcgacgtggtttcagatacgaaaag
gactattgctgggaatattttctgtcttcaaacacactgcagatgctgcataatatgaaa
ggacagtttgctgagcatcttcttggagctggatttgtaagcagtagaaatcctaaagat
ccagaatctaatataaattcagataatgagaagataattaaagctgtcatctgtgctggt
ttatatcccaaagttgctaaaattcgaccaaatttgggtaaaaaaagaaaaatggtcaaa
gtttacacaaaaaccgatggactggttgctattcatcctaaatctgttaatgtggagcaa
acagactttcactacaactggcttatctatcacctaaagatgagaacaagcagtatatac
ttgtatgactgcacagagatttccccatactgtctcttgttctttggaggtgatatttcc
atccagaaggataatgatcaggaaactattgctgtagatgagtggattatatttcagtct
ccagcaagaattgcccatcttgttaaggaattaagaaaggaactagatattcttctgcaa
gagaaaattgaaaatcctcatcctgtagactggaatgatactaaatccagagactgtgca
gtactgtcagctattattgacttgatcaaaacacaggaaaaggcaactcccaggaacttg
ccaccacgattgcaggatggatattacagctga
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