Callithrix jacchus (white-tufted-ear marmoset): 100389255
Help
Entry
100389255 CDS
T03264
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X9
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100389255 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100389255 (CNOT1)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100389255 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100389255 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
100389255
NCBI-ProteinID:
XP_002761068
Ensembl:
ENSCJAG00000011318
LinkDB
All DBs
Position
20:complement(13035912..13127645)
Genome browser
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECALLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIEAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMTSL
SIGGSTAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATNTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaattaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcagtttctgattcaggagtgtgcattg
ctgattacaaagccaaattttatctcgacgttgtcgtatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagtgctcaaa
ttaagcaaagtacaagaggtaatttttggccttgccctgttgaattcttccagctcagat
cttagaggtttcgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttat
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcgatagaggtc
ttacacctcctcctctcccatctcctctttgggcagaagggagcctttggagttggacaa
gaacagatagaggcttttcttaagacgttgcgcagagattttccccaagaacgctgtcct
gtggtgctcgcaccacttttataccctgaaaaacgggacattctaatggacaggatcctg
cctgattccggaggggtagctaaaaccatgatggagagctctttggctgatttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgcaagggttttgggaatgatggctcgaact
cattcaggattaacagatggcattccattacagagtatttctgctccgggcagtgggatc
tggagtgatggaaaagataaaagtgatggagcacaggcacacacgtggaatgtagaagtc
ttgattgatgttcttaaagagctgaatccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagtaaaggacttcataatgtggtttatggc
attcagaggggtttgggtatggaagtgttcccagtagacctcatatatagaccttggaaa
catgctgaaggccagctctccttcattcaacattcccttataaatccagagatcttctgt
tttgctgactatccctgtcatactgttgccactgatattctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctgctgaggctt
gcagaggttgggcagtatgagcaagtcaaacaactcttcagcttccctatcaaacactgt
ccagacatgctggtattggccttactacaaattaacacctcttggcataccttgcgccat
gaactcatctccactctgatgccaattttccttggaaaccaccctaactcagctattatt
ttgcactatgcatggcatgggcagggacagtctccctcaattcgccaactcatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgatcaggccaaattgtctcgaata
cttgatgtggcccaggatttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttcacggcgtgaatacctcaaacttgataagtgg
ctcacagataaaattcgagagcatggggagccttttatccaggcatgtatgactttttta
aagagacgatgtccttctattttgggtggacttgccccagaaaaagaccagcccaaaagt
gctcaacttcctccagaaactctggcgacaatgttggcctgtttgcaagcttgtgcaggg
agtgtttctcaggagttatcggaaactattcttaccatggtagccaattgcagtaatgtt
atgaataaggccagacaaccaccacctggagttatgccaaaaggacgtcctcctagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttgctggaatgacatctctt
agtataggtggttcaactgcccctcacacccagagtatgcagggttttcctccaaatttg
ggttctgcattcagtacccctcagtcaccagcaaaagcatttccacccctttcaaccccc
aatcagaccactgcattcagtggtattggaggactttcatcacagcttccagtaggtggt
cttggcacaggcagcctgactggtataggaactggtgctcttggactccctgcagtgaat
aacgacccttttgtacagaggaaactgggcacctctggattgaaccagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtgtggccagaagcaaaccagcacttt
agtaaagagatagatgatgaagcaaacagctatttccagcgaatatataatcatccacca
catccaaccatgtctgttgatgaggtattagaaatgctgcagagatttaaagactctact
ataaagagggaacgagaagtatttaactgtatgctaaggaacttgtttgaagaatatcgt
ttttttccccagtatcctgataaagagttacatataacagcctgcctgtttggtggtata
attgaaaaaggactagttacttacatggcactaggtctggccctacgatatgttcttgaa
gccttacgcaagccttttggatccaaaatgtattatttcgggattgctgcactagataga
tttaaaaacagattgaaggactatccccagtactgtcagcacttggcttctatcagtcac
tttatgcaatttccacatcatttacaggagtatatcgagtatggacagcagtcgagagat
cctcctgtgaaaatgcaaggctctatcacaacccctggaagtattgcactggcacaggcc
caggctcaggcccaggttccagcaaaagctcctcttgctggtcaggttagcactatggta
accacctcaacaaccaccactgttgctaaaaccgttacagtcaccaggccaactggagtc
agctttaagaaagatgtgccaccttctattaatactacaaatatagatacgttgcttgtg
gccacagatcaaactgagagaattgtggagcccccggaaaatatccaggagaaaattgct
ttcattttcaataatctctcacagtcaaatatgacacaaaaggttgaagagctaaaggaa
accgtgaaagaagaatttatgccttgggtttcacagtatctggttatgaagagagtcagt
attgagccaaactttcatagcctatattcaaactttcttgacacattgaagaatcctgaa
tttaacaagatggttctgaatgagacctatagaaacattaaagtgctcctgacctctgat
aaagctgcagccaatttctcagatcgttctttgctgaagaacttgggacattggctagga
atgatcacattagctaaaaataaacccatcttacacactgacttggatgtgaaatcattg
ctgctagaggcttatgttaaaggacaacaagaattgctctatgtagtgccctttgttgcc
aaagtcttagagtctagcattcgtagtgtggtttttaggccaccaaacccttggacaatg
gcaattatgaatgtattagctgagctacatcaggagcatgacttaaagttaaacttgaag
tttgaaattgaggtactctgcaaaaaccttgcattagacatcaatgagctaaaacctgga
aacctcctaaaggataaagatcgcctgaagaatttagatgagcaactttctgctccaaag
aaagatgtcaagcagccagaagagctccctcctatcacaaccacaacaacttctactaca
ccagctaccaacactacttgtacagccacggttccaccacagccacagtacagttaccat
gacatcaatgtctattcccttgccggcctggcaccccacattactctaaatccaacaatt
cccttgtttcaagcccatccacagttgaagcagtgtgtgcgtcaggcaattgaacgggct
gtccaggaattggtccatcctgtggtggatcgatcaattaagattgccatgactacttgt
gagcaaatagtcaggaaggattttgctctggattcggaggaatctcgaatgcgaatagca
gctcatcacatgatgcgtaacttgacagctggaatggctatgattacttgcagagaacct
ttgctcatgagcatatctaccaacctaaaaaacagttttgcctcagcccttcgtactgct
tccccacaacaaagggagatgatggatcaggcagctgctcaattggctcaggacaattgt
gagttggcttgctgttttattcagaagactgcagtagaaaaagcaggccctgagatggac
aagagattagcaactgaatttgagctgagaaaacatgctaggcaagaaggacgcagatac
tgtgatcccgttgtcttaacttatcaagccgaacggatgccagagcaaatcaggctgaaa
gttggtggtgtggacccaaagcagctggctgtttatgaagagtttgcacgcaatgttcct
ggcttcttgcctacaaatgacctaagtcagcccacaggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgtattacagaactggag
cagcatctacatgccatcccaccaactttggccatgaaccctcaagctcaggctcttcga
agtctcttggaggttgtagttttatctcgaaactctcgggatgccatagctgctcttgga
ttgctccaaaaggctgtagagggcttactagatgccacaagtggtgctgatgctgacctt
ctgctgcgctacagggaatgccacctcttggtactaaaagctctgcaggatggccgagca
tatgggtctccatggtgcaacaaacagatcacaaggtgcctaattgaatgtcgggatgaa
tataaatataatgtggaggctgtggagctgctaattcgcaatcatttggttaatatgcaa
cagtatgatcttcatttagcgcagtcaatggagaatggtttaaactacatggctgtggca
tttgctatgcaattggtgaaaatcctgctggtggatgaaaggagtgttgcccatgttacc
gaggcagatctgttccacaccattgagaccctcatgaggattaatgctcattccagaggc
aatgctccagaagggttgccccagctgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcatggaggcccaaactttatgatgcattctgggatctctcaagcctca
gagtacgatgaccctccgggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagctggccgcgacagtaccaaagctttctctgcgtttgtt
ggacagatgcaccagcaaggaatactaaagaccgatgatctcataacaaggttctttcgt
ctgtgtactgaaatgtgtgttgaaatcagttatcgtgctcaagctgagcagcagcacaat
cctgctgctaatcccactatgatccgagccaagtgctatcacaacctggatgcctttgtt
cgactcattgcactgctcgtgaaacactcaggggaggccaccaacactgtcacaaagatt
aatctgctgaacaaggtccttggtatagtagtgggagttctccttcaggatcatgatgtt
cgtcagagtgaatttcagcaacttccctaccatcgaatttttatcatgctgctcttggaa
ctcaatgcacctgagcatgtgttggaaaccattaattttcagacacttacagctttctgc
aatacattccacatcttgaggcctaccaaagctcctggctttgtatatgcctggcttgaa
ctgatttcccatcggatatttattgcaagaatgctggcacatacgccacagcagaagggg
tggcctatgtatgcacagctactgattgatttattcaaatatttagcgcctttccttaga
aatgtggaactcaccaaacctatgcaaatcctctacaagggcactttaagagtgctgctg
gttcttttgcatgatttcccagagttcctttgtgattatcattatgggttttgtgatgtg
attccacctaattgtatccagttaagaaatttgatcctgagtgcctttccaagaaacatg
aggctcccagacccattcactcctaatctaaaggtggacatgctgagtgaaattaacatt
gccccccggattctcaccaatttcactggagtaatgccacctcaattcaaaaaggatttg
gattcctatcttaaaactcgatcaccagtcacttttttgtctgatctgcgcagcaaccta
caggtatccaatgaacctggaaatcgctacaacctccagctcatcaatgcactggtgctc
tatgtagggactcaggccattgcgcacattcacaacaagggcagcacgccttcaatgagc
accatcactcattcagcacacatggatatcttccagaatttggctgtggacttggacact
gagggtcgctatctctttttgaacgcaattgcaaatcagctccggtacccaaatagccac
actcactacttcagttgcaccatgctgtacctttttgcagaggccaatacggaagctatc
caagaacagatcacaagagttctcttggaacggttgattgtaaataggccacatccttgg
ggtcttcttattaccttcattgagctgattaaaaacccagcgtttaagttctggaaccat
gaatttgtacactgtgccccagaaatagaaaagttattccagtcggtcgcacagtgctgc
atgggacagaagcaggcccagcaagtaatggaagggacaggtgccagttag
DBGET
integrated database retrieval system
