Callithrix jacchus (white-tufted-ear marmoset): 100389769
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Entry
100389769 CDS
T03264
Symbol
RBM39
Name
(RefSeq) RNA-binding protein 39 isoform X3
KO
K13091
RNA-binding protein 23/39
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjc03041
]
100389769 (RBM39)
Spliceosome [BR:
cjc03041
]
Common components
Common spliceosomal components
General mRNP proteins
100389769 (RBM39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
RRM_7
POP1_C
IHO1
Motif
Other DBs
NCBI-GeneID:
100389769
NCBI-ProteinID:
XP_002747278
Ensembl:
ENSCJAG00000017535
UniProt:
U3EX76
LinkDB
All DBs
Position
5:1421651..1463339
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AA seq
524 aa
AA seq
DB search
MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
ARLAEGTGLQIPPAAQQALQMSGSLAFGAVADLQTRLSQQTEASALAAAASVQPLATQCF
QLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIA
AVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatattgatattgaagcaatgcttgaggctccttacaagaaggatgagaac
aagttgagcagtgccaacggccatgaagaacgtagcaaaaagaggaaaaaaagcaagagc
agaagtcgtagtcatgaacgaaagagaagcaaaagtaaggaacggaagcgaagtagagat
agagaaaggaaaaagagcaaaagccgtgaaaggaagcgaagtagaagcaaagaaagacga
cggagccgctcaagaagtcgagatcggagatttagaggccgctacagaagtccttactcc
ggaccaaaatttaacagtgccatccgaggaaagattgggttgcctcatagcatcaaatta
agcagacgacgttcccgaagcaaaagtccattcagaaaagacaagagccctgtgagggaa
cctattgataatctaactcctgaggaaagagatgcaaggacagtcttctgtatgcagctg
gcagcaagaattcgaccaagggatttggaagagtttttctctacagtaggaaaggttcga
gatgtgaggatgatttctgacagaaattcaagacgttccaaaggaattgcttatgtggag
tttgttgatgttagctcggtgcctctagcaataggattaactggccaacgagttttagga
gtgccaatcatagtacaggcatcacaggcagaaaaaaatagagctgcagcaatggcaaac
aatttacaaaagggaagtgctggacctatgaggctttatgtgggttcattacactttaat
ataactgaagatatgcttcgtgggatctttgagcctttcggaaggattgaaagtatccag
ctcatgatggacagtgaaactggtcgatccaagggatatggatttattacattttctgat
tcagaatgtgccaaaaaggctttggaacaacttaatggatttgaactagcaggaaggcca
atgaaagttggtcatgttactgaacgtactgatgcttcaagtgctagttcatttttggac
agtgatgaactggaaaggactggaattgatttgggaacaactggtcgtcttcagttaatg
gcaagacttgctgagggtacaggtttgcagattccaccagcagcacagcaggctctacaa
atgagtggctctttggcatttggtgctgtggcagatttgcaaacaagactttcccagcag
actgaagcttcagctttagctgcagctgcctctgttcagccactggcaactcagtgtttt
caactctctaacatgtttaaccctcaaacagaagaagaagttggatgggatacagagatt
aaggatgatgtgattgaagaatgtaataagcacggaggagttattcatatttatgttgac
aaaaattcagctcagggcaatgtgtatgtgaagtgcccgtcaattgctgcagctattgct
gctgtcaatgcattgcatggcaggtggtttgctggtaaaatgataacggcagcatatgta
cctcttccaacttaccacaacctgtttcctgattctatgacagcaacacaactactggtt
ccaagtagacgatga
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