Callithrix jacchus (white-tufted-ear marmoset): 100390242
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Entry
100390242 CDS
T03264
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X3
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04120
Ubiquitin mediated proteolysis
cjc04137
Mitophagy - animal
cjc04141
Protein processing in endoplasmic reticulum
cjc05012
Parkinson disease
cjc05014
Amyotrophic lateral sclerosis
cjc05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100390242 (PRKN)
04120 Ubiquitin mediated proteolysis
100390242 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
100390242 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
100390242 (PRKN)
05014 Amyotrophic lateral sclerosis
100390242 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
100390242 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjc04131
]
100390242 (PRKN)
04121 Ubiquitin system [BR:
cjc04121
]
100390242 (PRKN)
03029 Mitochondrial biogenesis [BR:
cjc03029
]
100390242 (PRKN)
Enzymes [BR:
cjc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
100390242 (PRKN)
Membrane trafficking [BR:
cjc04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
100390242 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
100390242 (PRKN)
Xenophagy
Other xenophagy associated proteins
100390242 (PRKN)
Ubiquitin system [BR:
cjc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
100390242 (PRKN)
Mitochondrial biogenesis [BR:
cjc03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
100390242 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Rcat_RNF216
Rad60-SLD_2
Dsc3_N
Crinkler
Motif
Other DBs
NCBI-GeneID:
100390242
NCBI-ProteinID:
XP_008993595
UniProt:
U3FQA1
F7HWP0
LinkDB
All DBs
Position
4:complement(163974244..165437796)
Genome browser
AA seq
465 aa
AA seq
DB search
MLVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD
LDQQSIVHIVQRPWRKGQESNATGGDNPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLA
VILHTESRDDSPPAGSAAGRPVYNSFYVYCKGPCQKVQPGKLRVQCGTCRQATLTLTQGP
SGWDDVLIPNRMSGECQSPNCPGTSAEFFFKCGAHPTSDKETSIALHLIATNSRNITCIT
CTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
LHHFRILGEEQYNRYQHYAAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGC
GFAFCRECKEAYHEGECSALSEASGTIPQAYRVDERAAEQARWEEASKETIKKTTKPCPR
CHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRVCMGDHWFDV
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgctagtgtttgtcaggttcaactccagccatggtttcccagtggaggtcgattctgac
accagcatcttccagctcaaggaggtggttgctaagcgacagggggttccagctgaccag
ttgcgtgtgattttcgcagggaaggagctgaggaatgactggactgtgcagaactgtgac
ctggatcagcaaagcatcgttcacattgtgcagagaccatggaggaaaggtcaagaaagc
aatgcaactggaggtgacaaccccagaaatgcggcagggggctgtgagcgggagccccag
agcttaactcgggtggacctcagcagctcagtcctcccaggagactccgtggggctggct
gtcattctgcacactgagagcagggatgactcaccaccagctggaagtgcagcaggtaga
ccagtctacaacagcttttatgtttattgcaaaggcccctgtcaaaaagtgcagccggga
aaactcagggtacagtgcggcacctgcagacaggcaacgctcaccttgacccagggtcca
tctggctgggatgatgttttaattccaaaccggatgagtggcgagtgccagtccccgaac
tgccctgggaccagtgcagaatttttctttaaatgtggagcacacccaacctccgacaag
gaaacatcaatagctttgcacctgatcgccaccaacagtcgtaacattacttgcattacg
tgcacagatgtcaggagccccgtcctggttttccagtgcaactcccgccacgtgatttgc
ttagactgtttccacttatactgcgtgacgagactcaacgatcggcagtttgttcacgac
cctcagctgggctactccctgccttgtgtggctggctgtcccaactccttgattaaagag
ctccatcacttccggattctgggagaagagcagtacaaccggtaccagcattatgctgcg
gaggagtgtgtcctgcagatggggggtgtgttatgcccccgccctggctgtggagcgggg
ctgctgcctgagcctgaccagaggaaagtcacctgcgaagggggcaatggcctgggctgt
gggtttgccttctgccgggagtgtaaagaagcatatcatgaaggggagtgcagtgcccta
tctgaagcctcaggaacaattcctcaggcctacagagttgatgaaagagccgcagagcag
gctcgctgggaagaagcctccaaagaaaccatcaagaaaaccaccaagccctgtccccgc
tgccatgtaccagtcgaaaaaaatggaggctgcatgcacatgaagtgtccgcagccccag
tgcaggctcgagtggtgctggaactgtggctgtgagtggaaccgcgtctgcatgggggac
cactggttcgacgtgtag
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