Callithrix jacchus (white-tufted-ear marmoset): 100390312
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Entry
100390312 CDS
T03264
Symbol
PCDH9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100390312 (PCDH9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cjc01009
]
100390312 (PCDH9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cjc04515
]
100390312 (PCDH9)
Protein phosphatases and associated proteins [BR:
cjc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100390312 (PCDH9)
Cell adhesion molecules [BR:
cjc04515
]
Cadherins
Protocadherins
100390312 (PCDH9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
V_ATPase_I
Big_9
RCR
EphA2_TM
DUF6249
DUF6377
7tm_3
MAP17
Motif
Other DBs
NCBI-GeneID:
100390312
NCBI-ProteinID:
XP_008984209
UniProt:
U3EHC3
LinkDB
All DBs
Position
1:47623845..48552647
Genome browser
AA seq
1237 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTST
SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
NIPVTPQKCPSSAGFHIQENEESHYESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGS
NEGHFNNGSHMTDIPLANLKSYKQAGGAIESPKEHQL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggctgctctgattgcctgtttaaggctggattcc
gcaatagctcaagaacttatttacactattagagaggaattgcctgaaaatgtgcccata
ggaaacataccaaaggatctgaacatttctcacatcaatgctgccacagggaccagcacc
agccttgtctacagactggtttctaaagctggggatgcccctttggtgaaagtatccagc
agcactggggaaattttcacaacctccaacaggatagacagagaaaaactctgtgctggc
gcctcatatgctgaggagaatgagtgtttctttgaacttgaggtggtgatcctccccaat
gacttcttcaggctgatcaaaataaaaataattgtcaaggataccaatgataatgccccc
atgtttccatctcctgtcatcaatatttccattccagaaaacactttgatcaacagccgc
tttccaattccatcagcaacagatcctgacacaggcttcaatggtgtacagcattatgaa
ttgttaaatggtcagagtgtttttggactggatatcgtggaaactccggagggagagaag
tggccacaattgattgttcagcaaaacttggatagagaacagaaagatacctatgtgatg
aaaatcaaagtagaggatggaggcactccacagaaatccagtacggccatactgcaggtc
acagtaagtgatgtaaatgacaacaggccggtgtttaaagagggtcaagtagaggtgcat
attccagagaatgctcctgtaggtacctctgtaattcagctccatgccacagatgcagac
ataggcagcaatgctgaaatccggtacatttttggtgcccaggtcgcccctgcaaccaaa
agactctttgctttaaataatactactgggctgattacagttcagaggtccttagacaga
gaggagacagccattcacaaagtgacagtgctggctagtgatggcagctccactcctgct
cgagcaacggttaccatcaatgtcaccgatgtaaatgataaccctcctaacatagacctc
aggtacattataagtcccatcaatggcaccgtgtatttatctgagaaagatcctgtcaat
acaaagattgccctaattacagtttcagataaggacacagatgtgaatggcaaagtgatc
tgttttattgaaagagaggtcccatttcatttgaaggcagtttatgacaaccaatatttg
ttagagacctcttctttgttggactatgagggcaccaaagaattcagctttaaaattgtt
gcctctgattctgggaagcccagtttaaatcagactgccctggtaagggttaagcttgag
gatgaaaatgacaacccaccaattttcaaccagcctgtaattgagctgtcagtttctgaa
aacaaccgacgtgggttatacttaacaactattagtgccacagatgaagacagtgggaaa
aatgcagacattgtttatcagcttggaccgaatgcctccttctttgatctggaccgaaaa
acaggagttttgacagcctccagagtctttgacagagaagaacaagaacgattcattttt
acagtaactgccagggacaatggaacccctcccctccaaagccaagcggctgtgatagtt
actgttctggatgagaatgacaatagccccaagtttactcataatcattttcaatttttt
gtgtctgagaatctgccaaagtatagtactgtgggggtaatcacagtgacagatgcagat
gctggagagaataaagctgtgactctttccattctaaatgacaacgataattttgtgttg
gatccctattccggagtcataaagtcaaatgtctcctttgatagagagcagcagagttcc
tacacttttgatgtcaaagccactgatggaggacagccacctcgttcctctactgcaaaa
gtaactatcaacgtcatggatgtcaatgacaacagcccagttgtcatttctccaccatct
aatacttcctttaagttggtgcccctctcagccattcctggctccgtggtagcagaagtt
tttgcagtggatgttgacactggaatgaacgctgaactaaagtatactatagtgagtgga
aacaacaaaggcttatttcggattgatccagtaacaggtaacattactctggaagaaaaa
ccagcacctactgatgtgggattgcatcgcttggtggtcaacataagtgacctggggtac
cctaaatctttgcacacacttgtgcttgtatttctttatgttaatgacactgctggaaat
gcctcctatatctatgacttgatccgcaggactatggagaccccgctggacaggaacata
ggggatagtagccaaccctatcaaaatgaggactatctaaccatcatgattgccatcatc
gccggcgccatggtggtcatcgttgtgatcttcgtcactgttctggtgcgctgtcgccat
gcatcaaggttcaaagcagctcagaggagcaagcaaggtgccgaatggatgtccccaaac
caggagaacaaacaaaacaagaaaaagaaaagaaagaaaaggaagtctcccaagagctct
cttttgaactttgttactatcgaagagtccaaacctgatgatgcagttcatgaaccaatc
aatgggacaataagcctgccggctgaactggaggaacaaagtataggaagatttgactgg
ggcccggcacctccaaccacgttcaagcctaacagtcctgacctggccaagcactacaaa
tctgcttctccacagcctgcttttcatctcaaaccagacactccagtttctgtgaaaaag
catcatgtgattcaggaactccctttggacaacacctttgtcgggggttgtgataccctt
tctaaacgctcttccactagttcagatcacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggccccttacacaccagacagtgtaactcacacagcaaaagtgac
aatattcctgtcactcctcagaaatgtcccagctccgcgggtttccacattcaggagaat
gaagaaagccattacgagtcgcagcgccgtgttacgtttcacctccctgatggctcccag
gaaagctgcagtgacagtggtctaggagaccacgagccggtgggtagtggaaccctgatc
tcacaccctcttcctctggttcagccacaggacgaattctacgaccaggcctctccggac
aagaggaccgaagcagatggcaactctgaccccaactctgatgggcctttgggtccccga
ggattagctgaagctacagagatgtgcactcaagagtgcttggttttgggtcactctgat
aattgctggatgcctcctggcttgggtccatatcaacatcccaaatctccactctcaacc
tttgcaccccagaaagaatgggtcaagaaggacaagcttgtgaatgggcacaccctgacc
agagcctggaaggaagacagcaacaggaaccagttcaatgaccgtaagcaatatggctcc
aacgaaggccatttcaacaatggcagccacatgacagacattcctctggcaaatctgaag
tcttataagcaagcaggaggtgctatcgagagtcctaaggagcaccaactctaa
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integrated database retrieval system
