Callithrix jacchus (white-tufted-ear marmoset): 100390484
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Entry
100390484 CDS
T03264
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjc03021
]
100390484 (SCAF8)
03041 Spliceosome [BR:
cjc03041
]
100390484 (SCAF8)
Transcription machinery [BR:
cjc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100390484 (SCAF8)
Spliceosome [BR:
cjc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
100390484 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
100390484
NCBI-ProteinID:
XP_035152901
Ensembl:
ENSCJAG00000012631
LinkDB
All DBs
Position
4:157679896..157932669
Genome browser
AA seq
1292 aa
AA seq
DB search
MEAVKTFNSEDCASTPACTDCFSSSMDTRSILYSLNDYKPPISKAKMTQITKAAIKAIKF
YKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNL
YRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTTAMSNTPG
TPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQP
SILQALDAGLVVQLQALTAQLTAAAAAANTLTPLEQGVSFNKKLMDRFDFGEDSEHSEEP
KKEIPTSQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFG
SEHSASPSQGSSQQHFLEPEVNLDDSIDIQQQDMDIDEGQDGVEEEVFEQEAKKVAVRSR
SRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKER
QKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCM
VHRQDAFRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVD
DLEGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVA
MLQIPVAPAVPTVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPP
PVVPPPTIPPVVPTSLVQPSLSLTPETVKDVGFGSLVIPGGSVAGNLATSALPAANVFSA
PAKQAEPEEKVPHLIDHQISSGENTRSVIPNDISSNAAILGGQPPNVTSNSGILGVQRPN
VSSNSEILGVRPSNVSSSSGIIGVQPPSILNNSGILGIQPPSVSSSSGLLGVLPPNIPNN
SGLIGVQPPNVPNTSGLLGTQPPAGPQNLPPLSIPNQRMPTIPMLDIRPGLIPQAPGPRF
PLIQPGLPPQRGIPPPSVLDAALHPPPRGPFPPGDIFSQPERPFLAPGRQSIDNVTNPEK
RIPLGNDNIQQEGDRDYRFPPIETREGISRPPPVDVRDVVGRPIDPREGPGRPPLDGRDH
FGRPPVDIRENLVRPGIDHLGRRDHFGFNPEKPWGHRGDFDEREHRVLPVYGGPKGLHEE
RGRFRSGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLG
RDRIQNTWIPPPHARVFDYFEGATSQRKGDNVPQVNGENTERHAQPPPLPVQNDPELYEK
LTSSNEISKEKSDTVADIESEPVVESTETEGT
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaagactttcaatagcgaggattgtgcctctactcctgcttgtacagac
tgcttttccagcagcatggacacaagaagcatattgtattccctgaatgactataaacca
cccatttctaaagcgaaaatgacccaaattactaaagcagccatcaaagctattaagttc
tataagcatgtggtacagagtgttgagaagtttattcagaaatgtaaaccagaatacaaa
gtacctggactttatgttattgactccattgtgcgacaatcccgacatcagtttggtcaa
gaaaaggatgtgtttgcacccagatttagtaataacatcattagcactttccagaattta
tatcgttgccctggggatgacaagagtaaaatagtgagagtactaaacttatggcagaag
aataatgtatttaagagtgagattattcagcctcttttggatatggcagctgggatccca
cctcctgttgtcacgcctgttttagccagcactaccactgctatgagcaatactccagga
actccagtgacacctgttaccccggccaatgtggtccaaggcttacctgatccgtgggta
tctcagataacaaatacagatacacttgcagctgtggctcagatcttgcaaagtcctcaa
ggccagcagcttcaacagttaatacaaaccttacagatacaacagcagaagccccagcct
tccattctgcaggccctggatgctggtcttgttgttcagttgcaagctcttacagcacaa
cttacagctgcagctgcggctgccaacactctcactcccttagaacagggagtctccttt
aacaagaagttgatggatagatttgattttggggaagattctgagcatagtgaagaaccc
aaaaaggaaattccaacttcacaactttctcacgtttcagaatctgtgaacaattccatt
tttcatcagatagcagaacaactacaacagcaaaatctggaacatctcagacagcagctc
ttggaacagcaacagcctcaaaaggccactcctcaggatagccaggaaggaacatttggg
tcagagcattcagcgtcaccatcacaagggagtagtcagcagcattttcttgaacccgaa
gtcaatttggatgattccatagatattcagcagcaggatatggatatagatgaagggcaa
gatggagtggaagaggaggtctttgaacaagaagctaagaaagtggcagttcgctcgaga
tccagaacacattcacgttctcgttcaagatcaccaagaaaacgaaggtctaggtcacga
tctggttctagaaagcgtaaacacagaaagcgatcgcgctcccgctcaagagaaagaaag
aggaaatcatcacgatcgtattcaagtgaaaggagagccagagaaagagagaaagaacga
cagaaaaagggattacctccaattagatctaaaacattaagcgtatgtagtactactctc
tgggttgggcaagtggacaagaaggcaacacagcaagatttaaccaacctgtttgaagaa
tttggacaaattgaatccattaatatgattcctcccaggggctgtgcgtatgtctgcatg
gttcatcgacaggatgcatttcgagctcttcagaaactcagttctggatcgtataaaatt
gggtccaagatcattaagatcgcttgggctttaaacaaaggtgtaaaaacagaatacaaa
caattctgggatgtggatcttggagttacatatataccatgggaaaaagttaaagtagat
gacttggaaggttttgcagaaggaggcatgattgatcaggagactgtaaatactgagtgg
gaaactgtgaaaagctcagaacctgttaaagagacggtccagacaactcagagcccaact
ccagttgaaaaggagacagtggttacaacccaggcagaggttttccctcctcctgttgct
atgttgcagattccagtggcgccagctgtgcctacagttagtttagtcccaccagcattt
cctgtgtcgatgccagttcctcctcctggattcagtccaatccctccacctcctttttta
cgagcaagttttaacccttcacaaccaccacctggttttatgccgcctccagttccccca
ccagttgtgccaccccctacaattccaccagtagtaccaacatctttagtgcagccgtca
ttatccctaaccccggaaactgtgaaagatgttggatttggtagccttgttataccaggt
ggttctgttgccggcaatcttgctacttctgcactaccagctgcaaatgtttttagtgct
ccagctaaacaagcagagcctgaagaaaaagtacctcatcttatagaccaccagatttct
tctggtgaaaacaccagatcagtgattccaaatgatatttcaagtaatgctgcaatttta
ggaggacagccgccaaatgtgacaagcaattctggaattctgggagtccaaagaccaaat
gtatcaagtaattctgaaattcttggggtccggccatctaatgtttccagtagttctggg
attattggagtccaaccaccaagtattctaaataactctggaattttgggaatacagcca
cccagtgtgtcaagtagttctggacttttgggagtgctacccccaaatatacctaacaat
tctggacttataggagtacagccaccaaatgttccaaatacttctggacttctgggaaca
cagccaccagccggacctcaaaacttaccccctttaagtatccctaatcaaaggatgccc
acaataccaatgttagacattcgtccaggactaataccacaggcacctgggccaagattc
cctttaatacagcctggacttccaccccaacggggaatcccacccccatcggtacttgat
gcagctcttcatccaccaccccgtggaccttttcctccaggagatatttttagtcagcct
gaaagaccttttctagctcctggaagacaaagtatagacaatgttactaacccagaaaaa
aggataccacttgggaatgataacattcaacaggagggagatagagattaccggtttcct
cctatagaaaccagggaaggcattagtagacctccccctgtggatgttagagatgtggtg
gggcggcctatagatccaagagaaggtcctggacggcctccactagatggtagggatcat
tttggaagacctcctgtagacataagagagaatcttgtgaggccaggtatagatcatctt
ggtcgaagagaccactttggctttaatccagagaagccctgggggcatagaggagatttt
gatgagagagagcatcgcgttctaccggtctatggtggtccaaaaggcttacatgaagaa
agaggtagatttcggtctggaaactatcgatttgatcctagaagtggtccttggaacaga
ggatttggacaagaagttcacagagattttgatgaccgcagaagaccctgggagaggcaa
agggatagggatgacagagattttgatttctgcagagaaatgaatggaaatcgtcttgga
cgagacagaattcaaaacacttggatccctcctcctcatgctcgggtttttgattatttt
gaaggggccacttctcaacgaaaaggtgataatgtgcctcaggttaatggtgaaaataca
gagagacatgctcaaccaccacctttaccagtacagaatgatcctgaactttatgaaaaa
ctgacatcttcaaatgaaataagcaaggagaagagtgacacagttgctgatatagaaagt
gaaccagtggtagaaagcacagaaactgaggggacataa
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integrated database retrieval system
