Callithrix jacchus (white-tufted-ear marmoset): 100390648
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Entry
100390648 CDS
T03264
Symbol
RORA
Name
(RefSeq) nuclear receptor ROR-alpha isoform X5
KO
K08532
RAR-related orphan receptor alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04659
Th17 cell differentiation
cjc04710
Circadian rhythm
cjc05017
Spinocerebellar ataxia
cjc05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
100390648 (RORA)
09159 Environmental adaptation
04710 Circadian rhythm
100390648 (RORA)
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
100390648 (RORA)
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
100390648 (RORA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjc03000
]
100390648 (RORA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cjc03310
]
100390648 (RORA)
Transcription factors [BR:
cjc03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
100390648 (RORA)
Nuclear receptors [BR:
cjc03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
100390648 (RORA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
100390648
NCBI-ProteinID:
XP_002753242
Ensembl:
ENSCJAG00000003989
UniProt:
U3FGL0
LinkDB
All DBs
Position
10:complement(4706290..5476578)
Genome browser
AA seq
468 aa
AA seq
DB search
MMYFVIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNC
LIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQ
PGEAEPLTPTYNISANGLTELHDDLSNYMDGHTPEGSKADSAVSSFYLDIQPSPDQSGLD
INGIKPEPICDYTPASGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHLETCQYLREEL
QQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL
LKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDIFKSLGCEDFISFVFEFGKSLCSMHL
TEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGVLTKLICKVS
TLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgatgtattttgtgatcgcagcgatgaaagctcaaattgaaattattccatgcaagatc
tgtggagacaaatcatcgggaatccattacggcgtcattacatgtgaaggctgcaagggc
tttttcaggagaagtcagcaaagcaatgccacctactcctgtcctcgtcagaagaactgt
ttgatcgatcgaaccagtagaaaccgctgccagcactgtcgattacagaaatgccttgcc
gtggggatgtctcgggatgctgtaaaatttggccgaatgtcgaaaaagcagagagacagc
ttgtatgcagaagtgcagaaacaccggatgcagcagcagcagcgcgaccaccagcagcag
cccggggaggcggagccgctcacgcccacctacaacatctcggccaacgggctgacggaa
cttcacgacgacctcagcaactacatggacgggcacacccctgaggggagcaaggcagac
tctgccgtcagcagcttctacctggacatacagccttccccagaccagtcaggtcttgat
atcaatggaatcaaaccagaaccaatatgtgactacacaccagcatcaggcttcttcccc
tactgttcgttcaccaatggagagacttccccaaccgtgtccatggcagaattagaacac
cttgcacagaatatatcgaaatcgcatctggaaacctgccaatacttgagagaagagctc
cagcagataacatggcagacctttttgcaggaagaaattgagaactatcaaaacaagcag
cgggaggtgatgtggcaactgtgtgccatcaaaattacagaagctatacagtatgtggtg
gagtttgccaaacgcattgatggatttatggaactgtgtcaaaatgatcaaattgtgctt
ctaaaagcaggttctctagaggtggtgtttatcagaatgtgccgtgcctttgactctcaa
aacaacaccgtgtactttgatgggaagtatgctagccccgatatcttcaaatccttaggt
tgtgaagactttattagctttgtgtttgaatttggaaagagtttatgttctatgcacctg
actgaagatgaaattgcattattttctgcattcgtactgatgtcagcagatcgctcatgg
ctgcaagaaaaggtaaaaattgaaaaactgcaacagaagattcagctagctcttcagcac
gtgctacagaagaatcaccgagaagacggagtactcacaaagttaatatgcaaggtgtct
acattaagagccttatgtggacgacatacagaaaagctaatggcatttaaagcaatatac
ccagacattgtgcgacttcattttcctccattatacaaggagttgttcacttcagaattt
gagccagcaatgcagattgatgggtaa
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