Callithrix jacchus (white-tufted-ear marmoset): 100390990
Help
Entry
100390990 CDS
T03264
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03013
Nucleocytoplasmic transport
cjc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100390990
09122 Translation
03013 Nucleocytoplasmic transport
100390990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100390990
03041 Spliceosome [BR:
cjc03041
]
100390990
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
100390990
Spliceosome [BR:
cjc03041
]
Complex C
Other components
EJC/TREX
100390990
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100390990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
GBP_C
Motif
Other DBs
NCBI-GeneID:
100390990
NCBI-ProteinID:
XP_054107583
LinkDB
All DBs
Position
Y:complement(4394420..4515347)
Genome browser
AA seq
1168 aa
AA seq
DB search
MAAAAVVVPAEWIKNWEKSGRGEFLHLCRILSENKSLDSSTYRDFQQALYELSYHVIKGN
LKHEQASNVLNDISEFREDMPSILADVFCILDIETNCLEEKSKRDCFTQLVLACLHLVSA
TVLKERLDPETLESLGLIKQSQQFHQKTVKIKTKLFYKQQKFNLLREENEGYAKLIAELG
QDLSGSITSDLMLENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFMSLLESYMSMCE
PQTLCHILGFKFKFYQKPNGETPPSLYRVAAVLLQFNLIDLDDFYVHLIPADNCIMDEHK
QEIVEAKQIVRKLTTVVLSSEQMDDREKEKEKEEEKVERPPGNQKLGLLEALLKIGDWQH
AQDIMDQMPPYYAASHKLIALAICKLIHITTEPLYRRVGVPKGAKGSPVNALQNXRAPKQ
ADSFEDXRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKAEVIL
SCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNSHPLLVK
VKAQTIDRAKYIMKRLTKENVEASGRQIGKLSHSNPAILFDYILSQIQKYDNLVTPVVVS
LKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLANFCGAVFHKYPIDLAGL
LQYVVNQLKAGKSFDLLILKEVVQKMAGIQITEEMTVEQLEAMTGGEQLKAEGGYFGQIR
NTKESSQRLKDALLDHDLVLPLFLLMAQQRNRIIFQEGGEKHLKLVGKLYDQCHDTLVQF
GGFLASNLSTEDYIERVPSIDVLCNEFHAPHDAAFFLSRPMYARHISSKYDELKKSEKGS
KEQHKVHKYITSCEMVMAPVHEAVVSLHVSEVWDDISPQFYATFWSLTMYDLAVPHTSYK
REVNRLKIHMRAIDDNQEMPPNKKKKEKEHCTALQDKLLEEEKKQMEHVQRVLQRLKLEK
DKWLLAKSNKNETITKFLQLCLFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCYDRV
FSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRATYEKECGNYPGFFATLRATGFD
GGNKAHQLDYKNFRHLVHKWHYKLTKASIHCLETGEYTHIRNILIVLTKILPCYPKVLNL
GQALERRVHKICEEEKERRPDLYALAMG
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcggctgtggtggttccagcagagtggataaagaactgggagaaatcaggg
agaggcgaatttttgcatttatgtcggatcctcagtgaaaataaaagccttgatagttcg
acatacagagatttccagcaagctctctatgaattgtcatatcatgtaattaaaggaaat
ctaaagcatgaacaggcatctaatgttcttaatgacattagtgaatttcgtgaggatatg
ccctccattcttgctgatgtattctgcatattagatattgaaacaaattgtttagaagaa
aagagcaagagagactgttttacccagttggtattagcatgtttgcatttagtttcagcc
acagtcctgaaggaacgcctggatccagaaacactggaatcattagggcttatcaaacaa
tcacagcagttccatcaaaagacagttaaaatcaagacaaaactcttttataagcagcag
aaattcaatttgttaagagaagagaatgaaggttatgccaagctgattgctgaattgggg
caagatttatctggaagcattactagtgatttaatgttagaaaatatcaaatctttaata
ggatgctttaatctggatcccaatagagttttggatgtcattttggaagtgtttgaatgc
aggccagaacacgatgacttctttatgtctttgttagaatcttacatgagtatgtgtgaa
ccgcaaacactgtgtcatattcttgggttcaaattcaagttttaccagaaaccaaatggc
gagacaccaccatctttatacagagttgcagctgtacttctacaatttaatcttattgat
ttagatgatttctatgtacatcttattccagctgataattgcatcatggatgaacacaaa
caagaaattgtggaagctaagcaaattgttagaaaacttacgacggttgtgttgtcttct
gaacaaatggatgatcgagagaaagaaaaggagaaagaagaggagaaagtagagaggcca
cctggtaaccaaaaacttggcttgttggaagccttattaaagatcggtgactggcaacat
gcacaggacattatggatcagatgcctccatactatgcagcttcacataagctaatagca
cttgctatttgcaagctcattcacataactactgaacctctctaccgaagagttggtgtt
cctaaaggtgctaagggctcacctgttaatgctttgcaaaacnagagggcaccaaaacaa
gctgacagttttgaagatntgaggagagacgtgtttaatatgttctgttaccttggtcct
cacctttctcatgatcccattttatttgcaaaagtggtgcgcataggcaagtcatttatg
aaggagtttcagtctgatggaagcaaacaagaagataaagaaaaagcggaagttatcctt
agctgcttgcttagcattactgaccaggtactacttccatctctttctctgatggactgc
aatgcctgtatgtctgaggaactatggggaatgtttaaaacatttccatatcagcataga
taccgtctgtatggccagtggaagaatgaaacttataacagccacccacttttagtaaaa
gttaaggctcaaacaatagacagagccaaatatatcatgaagcgcctaacgaaggaaaat
gtggaggcttctggaagacaaattgggaagctgagccacagcaatccagctattttgttt
gattatatcttgtcgcaaatacagaagtatgataacttagtaacacctgtagtagtttca
ttgaaatacctcacttcattgaattatgatgttttggcctattgtatcattgaagcttta
gctaatccagaaaaggaaagaatgaaacatgatgacacaaccatctcaagctggcttcag
agtctggctaatttctgtggtgcagtttttcataaatatccaattgatcttgccggcctt
cttcagtatgttgtcaatcagctaaaggcgggtaaaagttttgacctgcttatattgaaa
gaagtcgtgcaaaaaatggcaggaatacaaattacagaggaaatgacggtggagcaacta
gaggccatgactggtggagagcagctaaaagctgagggtggttattttggccagatcaga
aacactaaagaatcctctcagagattaaaggatgctcttttggaccatgatcttgtcctt
cctctctttctccttatggctcagcagaggaataggataatctttcaggaaggtggagag
aaacatttgaaacttgtgggaaagctctatgaccagtgtcatgataccctggtgcagttt
ggcgggtttttagcatctaatctgagcacagaagattatatagagcgagtgccttcaatt
gatgtactctgtaacgaatttcatgcaccccatgatgcggcatttttcctgtctagacca
atgtatgcccgtcatatttcgtcaaagtatgatgaacttaaaaaatcagaaaagggaagt
aaagagcaacataaagttcataagtacataacatcatgtgagatggtgatggctcctgtc
catgaagcagtggtctccttacatgtttccgaagtctgggatgacatcagccctcaattc
tatgccacgttctggtcattgacaatgtatgaccttgcagttccacacaccagctataaa
cgagaagtaaatagacttaaaatccacatgagagcaattgatgacaatcaagaaatgccc
ccaaataaaaagaaaaaagagaaggagcactgtactgctcttcaggacaagcttcttgaa
gaagaaaagaaacagatggaacatgtacagagagttctacagagattgaaactggaaaag
gacaagtggcttttagcaaaatctaacaaaaatgagaccatcacaaaatttctacagctg
tgtttatttcctcgatgtattttttcagcaattgatgctgtttactgtgctcgttttgtt
gaattggtacatcaacagaaaactccaaatttttccacacttctttgctatgatcgagtt
ttctctgacataatttacacagttgcaagctgtactgaaaacgaagccagtcgctatgga
aggtttctttgctgcatgttagagactgtgaccaggtggcatagcgatagagccacatat
gaaaaggaatgtggaaactatccaggattttttgccacattacgggcaactggatttgat
ggtggaaataaggctcatcaattagactataaaaattttcgacatcttgtacataaatgg
cattataaactaaccaaggcatcgatacattgccttgaaacaggcgaatatactcacatc
cggaatatcttgattgtgctaacaaaaatacttccttgctacccaaaagttttgaatctg
ggtcaagctttggaaagaagagtacacaaaatctgcgaagaagaaaaagagaggaggcca
gatctatatgcattggctatggggtaa
DBGET
integrated database retrieval system
