KEGG T03264: 100392312

Callithrix jacchus (white-tufted-ear marmoset): 100392312

Entry

100392312         CDS       T03264

Symbol

HMGB1

Name

(RefSeq) high mobility group protein B1

K10802

high mobility group protein B1

Organism

cjc Callithrix jacchus (white-tufted-ear marmoset)

Pathway

cjc03410

Base excision repair

cjc04140

Autophagy - animal

cjc04217

Necroptosis

cjc04613

Neutrophil extracellular trap formation

Brite

KEGG Orthology (KO) [BR:cjc00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    100392312 (HMGB1)
09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    100392312 (HMGB1)
  09143 Cell growth and death
   04217 Necroptosis
    100392312 (HMGB1)
09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    100392312 (HMGB1)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cjc03036]
    100392312 (HMGB1)
   03400 DNA repair and recombination proteins [BR:cjc03400]
    100392312 (HMGB1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cjc04147]
    100392312 (HMGB1)
Chromosome and associated proteins [BR:cjc03036]
Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    100392312 (HMGB1)
DNA repair and recombination proteins [BR:cjc03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     100392312 (HMGB1)
   MMR (mismatch excision repair)
    Other MMR factors
     100392312 (HMGB1)
Exosome [BR:cjc04147]
Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   100392312 (HMGB1)

SSDB

Motif

Pfam:

HMG_box_2 HMG_box NOA36 HMG_box_5 Nop14

Other DBs

NCBI-GeneID:

100392312

NCBI-ProteinID:

XP_035158328

Ensembl:

ENSCJAG00000021615

LinkDB

Position

5:complement(145753982..145892030)

AA seq 215 aa
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE

NT seq 648 nt +upstreamnt +downstreamnt
atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattttttgtg
caaacttgtcgggaggagcataagaagaagcacccagatgcttcagtcaacttctcagag
ttttctaagaagtgctcagagaggtggaagaccatgtctgctaaagagaaaggaaaattt
gaagatatggcaaaggcggataaggcccgttatgagagggaaatgaaaacctatattcct
cctaaaggggagacaaaaaagaagttcaaggatcccaatgcacccaagaggcctccttcg
gcctttttcctgttctgctctgagtatcgcccaaaaattaaaggagaacatcctggcctg
tccattggtgatgttgcgaagaaactgggagagatgtggaataacactgctgcagatgac
aagcagccttatgaaaagaaggccgcgaagctgaaggaaaaatatgaaaaggatattgct
gcatatcgagctaaaggaaagcctgatgcagccaaaaagggagttgtcaaggctgaaaaa
agcaagaaaaagaaggaagaggaggaagatgaggaagatgaagaggatgaggaggaagag
gaagatgaagaagatgaagatgaagaagaagatgatgatgatgaataa

DBGET integrated database retrieval system