Callithrix jacchus (white-tufted-ear marmoset): 100392333
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Entry
100392333 CDS
T03264
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04820
Cytoskeleton in muscle cells
cjc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100392333 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100392333 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100392333 (COL11A1)
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100392333 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100392333
NCBI-ProteinID:
XP_002751193
Ensembl:
ENSCJAG00000008922
LinkDB
All DBs
Position
7:140133746..140348528
Genome browser
AA seq
1806 aa
AA seq
DB search
MEPWSSRWKTKRWLWDFTVTTLAMTFLFQAREVRGASPVDVLKALDFHNSPEGISKTTGF
CTNRKNSKGADTAYRVSKQAQLSAPTKQLFPGGTFPEDFSILFTVKPKKGIQSFLLSVYN
EHGIQQIGVEVGRSPVFLFEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV
DCKKKTTKPLDRSERAIVDTNGITVFGTRILDEEVFEGDIQQFLITGDPKAAYDYCEHYS
PDCDSSAPKAAQAQEPQIDEYAPEDIIEYDYEYGEAEYKEAESVTEGPTVTEETIAQTEA
NVVDDFQEYNYGTLESYQTEAPRRVSGTNEPNPVEEIFTEEYLTGEDYDSQRKNSEDTLY
ENKEIDGRDSDLLVDGDLGEYDFYEYKEYEDKPTSPPNEEFGPGVPANTDITETSINGHG
AYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLP
GADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRP
GPVGGPGSAGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDR
GFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTP
GSPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGAPGEKGPQGKP
GLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEK
GEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP
GLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKP
GPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKT
GPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKD
GPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ
GPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSK
GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQ
GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEA
GNPGPPGEAGIGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP
GEPGPAGQDGIGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK
GEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP
GLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPP
GPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSSKKTRRHTEG
MQADADDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDG
EYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKEKSGSWFSEFKRGKL
LSYLDVEGNSINMVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSGSYDKALRFLGSNDE
EMSYDNNPFIKALYDGCASRKGYEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVG
PVCFLG
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atggagccgtggtcctctaggtggaaaacgaaacggtggctctgggatttcaccgtaaca
accctcgcaatgactttcctcttccaagctagagaggtcagaggagcttctccagttgat
gtactaaaagcactagattttcacaattctccagagggaatatcaaaaacaacgggattt
tgcacaaacagaaagaactctaaaggcgcagatactgcttacagagtttcaaagcaagca
caactcagtgccccaacaaaacagttatttccaggtggaacttttccagaagacttttct
atattatttacagtaaaaccaaaaaaaggaattcagtctttccttttatctgtatataat
gaacatggtattcagcaaattggtgttgaggttgggcgatcacctgtttttctgtttgaa
gaccacactggaaaacctgccccagaagactatcccctcttcagaactgttaacatagcc
gatgggaagtggcatcgggtagcaatcagcgtggagaagaaaactgtgacaatgattgtt
gattgtaagaagaaaaccacaaaaccacttgatagaagtgagagagcaattgttgatacc
aatggaatcacggtttttggaacaaggattttggatgaagaagtttttgagggggacatc
cagcagtttttgatcacaggtgaccccaaggcagcatatgactactgtgagcattatagt
ccagactgtgactcttcagcacccaaggctgctcaggctcaggaacctcagatagatgag
tatgcaccagaggatataatcgagtatgactatgagtatggggaagcagaatataaagag
gctgaaagtgtaacagagggacccactgtaactgaggagacaatagcacagacggaggca
aatgtcgttgatgattttcaagaatacaactatggaacattggaaagttaccagacagaa
gctcctaggcgtgtatctgggacaaatgagccaaatccagttgaagaaatatttactgaa
gaatatctaacgggagaggattatgattcccagaggaaaaattctgaggatacactatat
gaaaacaaagaaatagacggcagggactctgatcttctggtagatggagatttaggcgaa
tatgatttttatgaatataaagaatatgaagataaaccaacaagcccccctaatgaagaa
tttggtccaggtgtaccagcaaacactgatattacagaaacaagcataaatggccatggt
gcatatggagagaaaggacagaaaggagaaccagcagtggttgagcctggtatgcttgtg
gaaggaccaccagggccagcaggacctgcaggtattatgggtcctccaggtctgcaaggc
cccactggaccccctggtgaccctggcgataggggccccccaggacgtcctggcttacca
ggggctgatggtctacctggtcctcctggtaccatgttgatgttaccgttccgttatggt
ggtgatggttccaaaggaccaaccatctctgctcaggaagctcaggctcaagctattctt
cagcaggctcggattgctctgagaggcccacctggcccaatgggtctaactggaagacca
ggtcctgtggggggacctggttcagctggggccaaaggtgagagtggcgatccaggtcct
cagggccctcgaggtgtccagggtccccctggtccaacaggaaaacctggaaaaaggggt
cgtccaggtgcagatggaggaagaggaatgccaggagaacctggggcaaagggagatcga
gggtttgatggacttccaggtctgccaggtgacaaaggtcacaggggtgaacgaggtccc
caaggtcctccaggtcctccgggtgatgatggaatgaggggagaagatggagaaattgga
ccaagaggtcttccaggtgaagctggcccaagaggtttgctgggtcccaggggaactcca
ggatctccagggcagcctggtatggcaggtgtagatggccccccaggaccgaaagggaac
atgggtccccagggggagcctgggcctccaggtcaacaagggaatccaggacctcaaggt
cttcctggtccacaaggtccgattggtgctcctggtgaaaaaggacctcaaggaaaacct
ggacttgctggacttcctggtgctgatgggcctcccggtcatcctgggaaagaaggccag
tctggagaaaagggtgctctgggtcctcctggtccacagggtcctattggctaccctggc
ccccgaggagtaaagggagcagatggtgtcagaggtctcaagggttctaaaggtgaaaag
ggtgaagatggttttccaggattcaaaggtgacatgggtcttaaaggtgacagaggagaa
gttggtcaaattggcccaagaggggaagacggccctgaaggccccaaaggtagagcaggc
ccaactggagacccaggtccttctggtcaagcaggagaaaagggaaaacttggagttcca
ggattaccaggatatccaggaagacaaggtccaaagggttccactggattccctggcttt
ccaggtgccaatggagagaaaggtgcacggggagtagctggcaaaccaggccctcggggt
cagcgtggtccaacgggtcctcgaggttcaagaggtgcaagagggcccactgggaaaccc
gggccgaagggcacttcaggcggtgacggtcctcctggccccccaggtgaaagaggtcct
caaggaccacagggtccagttggattccctggaccaaaaggcccccctggaccacctggg
aaggatgggttgccaggacaccctgggcaacgtggggagactggatttcaaggcaagact
ggccctcctgggccagggggagtggttggaccacagggaccaactggtgagactggtcca
ataggggaacgagggcatcctggccctcctggccctcctggtgaacaaggacttcctggt
gctgcaggcaaagaaggtgcaaagggtgatccaggtcctcaaggtatctcagggaaagac
ggaccagcaggattacgtggtttcccaggggaaagaggtcttcccggagctcagggtgca
cctggactgaaaggaggggaaggtccccagggcccaccaggtccagttggctcaccagga
gaacgtgggtcagcaggtacagctggcccaattggtttaccagggcgcccgggacctcag
ggtcctcctggtccagctggagagaaaggtgctcctggagaaaaaggtccccaagggcct
gcagggagagatggagttcaaggtcctgttggtctcccagggccagctggtccggctggc
tcccctggggaagacggagataagggtgaaattggtgaaccaggacaaaaaggcagcaaa
ggtgacaaaggggaaaatggtcctcctggtcccccaggtcttcaaggaccagttggtgcc
cctggaattgctggaggtgatggtgaaccaggtcctagaggacagcaggggatgtttggg
caaaaaggtgatgagggcgccagaggcttccctggacctcctggtccaataggccttcag
ggtctgccaggcccacctggtgaaaaaggtgaaaatggagatgtcggtcccatgggtcca
cctggtcctccaggcccaagaggccctcaaggtcccaatggagccgatggaccacaagga
cctccagggtctgtcggttcagttggtggtgttggagaaaagggcgaacctggagaagca
gggaacccagggcctcctggggaagcaggcataggtggtcccaaaggcgaaaggggagag
aaaggtgaagctggtccacctggagctgctggacctcctggtgccaaggggccaccaggt
gatgatggccctaagggtaatccgggtcctgttggttttcctggcgatcccggtcctcct
ggggaacctggccctgcaggtcaagatggtattggtggtgacaagggtgaagatggagat
cctggtcaaccaggtcctcctggtccatccggtgaggctggcccaccaggtcctcctgga
aaaagaggtcctcctggagctgcaggtgcagaaggaagacaaggtgaaaaaggcgctaag
ggagaagcaggtgccgaaggtcctcctggaaaaaccggcccagtcggtcctcagggacct
gcagggaaacctggtccagaaggtcttcggggcatccctggccctgtgggagaacaaggt
cttcctggagctgcgggccaagatgggccacctggccctatgggacctcctggcttacct
ggtcttaaaggtgaccctggctccaagggagaaaagggacatcctggtttaattggcctg
attggtcctccaggagaacaaggggaaaaaggtgaccgagggcttcctggaactcaagga
tctcctggagcaaaaggggatgggggaattcccggtcctgctggtcccataggtccacct
ggtcctccaggtttaccgggtcctcaaggcccaaagggtaacaaaggctctactggacct
gctggccagaaaggtgacagtggtcttccagggcctcctgggcctccgggtccacctggt
gaagtcattcagcctttaccaatcttgtcatccaaaaaaacaagaagacatactgaaggc
atgcaagcagatgcagatgataatattcttgattactccgatggaatggaagaaatattt
ggttccctcaattccctgaaacaagacatcgagcatatgaaatttcccatgggtactcag
accaatccagcccgaacttgcaaagacctgcaactcagccatcctgacttcccagatggt
gaatattggattgatcctaaccaaggttgttcaggagattccttcaaagtttactgtaat
ttcacatctggtggtgagacttgcatttatccagacaaaaagtctgagggagtgagaatt
tcgtcatggccaaaggagaaatcaggaagttggtttagtgaatttaagaggggaaaactg
ctttcatatttagacgttgaaggaaattccatcaatatggtgcaaatgacattcctgaaa
cttctgaccgcctctgctcggcaaaatttcacctaccactgtcatcagtcagcagcctgg
tatgatgtgtcatcaggaagttatgacaaagcacttcggttcctgggatcaaatgatgag
gagatgtcctatgacaataacccattcatcaaagccctgtatgacggctgtgcgtccaga
aaaggctatgaaaagactgtcattgaaatcaatacaccaaaaattgatcaagtgcctatt
gttgatgttatgatcaatgactttggtgatcagaatcagaagtttggatttgaagttggt
cctgtttgctttctcggctaa
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integrated database retrieval system
