Callithrix jacchus (white-tufted-ear marmoset): 100392727
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Entry
100392727 CDS
T03264
Symbol
VPS13A
Name
(RefSeq) intermembrane lipid transfer protein VPS13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjc04131
]
100392727 (VPS13A)
Membrane trafficking [BR:
cjc04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
100392727 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_mid_rpt
VPS13_ext_chorein
VPS13_DH-like
VPS13_VAB
Chorein_N
VPS13_C
ATG2-VPS13_C
Motif
Other DBs
NCBI-GeneID:
100392727
NCBI-ProteinID:
XP_035128661
Ensembl:
ENSCJAG00000003147
LinkDB
All DBs
Position
1:102914400..103166384
Genome browser
AA seq
3175 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENALSQLDVPFKVKVG
HIGNLKLTIPWKNLYTLPVEAVLEEIYLLIVPSSRIKYDPLKEEKQLMEAKQHELKRIEE
AKQKVVDQEQHLPEKQDTFAEKLVTQIIKNLQVKISSIHIRYEDDITNRDRPLSFGISLQ
NLSMQTTDQYWVPCLHDETEKLVRKLIQLDNLFAYWNVKSQIFYLNDYDDSLDNLRNGIV
SENIVPEGYDFVFRPISANAKLVMNRRSDFDFSAPKINLDVELHNIAIEFNKSQYFSIME
LLESVDMMTQNLPYRKFRPDVPLHHHAREWWAYAIHGVLEVNVCPRLRMWSWNHIRKHRQ
KMKQYKELYKKKLTSKKPPGELLVSLEELEKTLDVFNITIARQQAEVEVKKAGYKIYKEG
VKDPEDNKGWFGWLWSWSEQKTNEQQPDVKPGILEEMLTPEEKALLYEAIGYSETAVDPT
LPKTFEALKFFVHLKSMSVVLRENHQKAELLDIVIEEFSTLIVQRPGAQAIKFETKIDSF
HITGLPDNSKKPRLLSSLDDAMSLFQITFEINPIDETVTQRCIIEAEPLEIIYDARTVNS
IVEFFRPPKEVHLAQLTSATLTKLEEFRNKTATGLLYIIETQKVLDLKINLKASYIIVPQ
DGIFSPTSNLLLLDLGHLKVTSKSRSELPDVKQGEANLEEIMDIAYDSFDVQLTSIQLLY
SRVGDNWREARKLNVSTQHILVPMHFNLELSKAMVFMDVRMPKFKIFGKLPLISLRISDK
KLQGIMELIDSIPKPEPVTEVSAPVKSFQIQTSASLGTTQISQKIIPLLELPSVSEDDSE
EEFFDAPCSPLEEPPQFPSGVKCIRTRKLQKPDCSVNMTTIKIRFEVPKVLTDFYHLVGD
CELPVIEIYVLGLGTEIEIRTYDLKANAFLKEFCLKCPEYLDENKKPVYLITTLDNTMED
LLTLEYVKAEKNVPNLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLNNILPQSEEK
SAPVSTVFPETEDKGDVIKKLALKLSTNEDIITLQILAELSCLQIFIQDQKRNISEIKIE
GLDSEMIMRPSETEINAKLRNIIVLDSDITAVYKKAVYITGKEVFSFKMVSYMDATAGSA
YTDMNVVDIQVDLIVGCIEVIFVTKFLYSILAFIDNFQAAKQALAEATVQAAGMAATGVK
ELAQRSSRMALDIHVKAPVVVIPQSPVSKNVFVADFGLITMTNTFHMITESESSPPPVID
LITIKLSKMRLYRSEYINDAYQEVLDLLLPLNLEVVVERNLSWEWYQEVPCFNVNAQLKP
MEFILSQEDITTIFKTLHGNIWHGEGGSASPAVTNDQYSVTSGVTTNASHHSGGSTVVTA
AVVEVHSCASPVKTTLNVSFKTDYLTMVLYSPGPKQASFTDVRDPALKLAEFKLENIIST
LKMYSDDSTFSSFSLKNCILDDKRPHVKKATPRMIGLTVGFDKKDMMDIKYRKVRDGCVT
DAVFQEMYICASVEFLQTVANVFLEAYTTGTAVETSVQTWTAKEEVPTQESEKVEINVII
KNPEIVFVADMTKNDAPALVITTQCEICYKGDLENSTMTAAIKDLQVRACPFLPVKRKGK
ITTVLQPCDLFYQTTQIGADPQVIDMSVKSLTLKVSPVIINTMITITSALYTNKETLPKE
TASSTAHLWEKKDTKTLKMWFLEESNETEKTAPTAELVPKGEMMKMNIDSIFIVLEAGVG
HRTVPMLLAKSRFSGEGKNWSSLINLHCQLELEVHYYNEMFGVWEPLLEPLEIDQTENFR
PWNLGIKMKKKAKKAIVESDREEENYKVPEYKTVISFHSKDQLNITLSKCGLIMLNNLVK
AFTEAATGFSADFVRDLAPFIILNSLGLTVSVSPSDSFSVLNIPMAKSYVLKNEESLSMD
YVRTKDNDHFSAMTSLSSKLFFILLTPVNHSTADKIPLTKVGRRLYTVRHRDSGVERSIV
CQIETVEGSKKVTIRSPVQIRNHFSVPLSVYEGDTLLGTVSPENEFNVPLGSYRSFLFLK
PEDEDYQMCEGIDFEEIIKNDGALLKKKCRSKNPSKKSFLINIVPEKDNLTSLSVYSEDG
WDLPYIMHLWPPILLRNLLPYKIAYYIEGIENSVFTLSEGHSAQICTVQLDEARLHLKLL
DYLNHDWKSEYHIEANQQDISFINFTCVTEMEKTDLDIAVHMTYNTGQTVVAFHSPYWMV
NKTGRMLQYKADGIHRKHPPDYKKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVG
SHGAVKCKGLKMEYQVGVTIDLSSFNITRIVTFTPFYMIKNKSKYRVSVAEEGSGKWLSL
DLEQCIPFWPEDAASKLLIQVEKSKDPPKRIYFNKQENCILLRLDNELGGIIAEVNLAEH
STVITFLDYHDGAATFLLINHTKNELIQYHQSSLSEIEDSLPPGKAVFYTWADPVGSRTL
KWRCRKSNGDVTQKDDMMMAIDLGTKTVYLVSFFEGLQRIILFTEDPKVFKVTYESEKAE
LAEQEIAVALQDVGISLVNNYAKQEVAYIGITSSDVVWETKPKKKSRWKPMSVKHTEKLE
REFKEYTESSPSEDKVVELDTNIPVCLTPTGHNMKILQPHAIALRRNYLPALKMEYNTSA
HQSLFRIQIYRIQIQNQIHGAVFPFVFYPVKPPKSVTMDSAPKPFTDVSIVMRSAGHSQI
SRIKYFKVLIQEMDLRLDLGFVYALTDLMTEAEVTENTEVELFHKDIEAFQEEYKTVSVD
QSQVSLYEYFHISPIKLHLSVSLSSGREEAKDSKQNGGLIPVHSLNLLLKSIGATLTDVQ
DVVFKLAFFELNYQFHTTSDLQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEG
VEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAITMDE
DYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVG
KGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLRPPRFFNEDGVIRPYRLRDGTGN
QMLQVMENGRFAKYRYFTHVMINKTDMLMITRRGVLFVTKGTFGQLTCEWQYSFDEFTKE
PFIVHGRRLRIEAKERVKSVFHAREFGKIINFRTPEDARWILTKLEEAREPSPSL
NT seq
9528 nt
NT seq
+upstream
nt +downstream
nt
atggttttcgagtcggtggtcgtggacgtgctgaaccgattcttgggggactatgtggtg
gacctggacacgtcccagctctctctgggcatctggaaaggagctgtggccctcaagaat
cttcaaattaaagaaaacgccctgagtcaactggatgtaccatttaaagttaaagttggt
catataggtaatcttaaacttacaataccatggaaaaacctttatactctacctgttgaa
gctgtattggaagaaatttatttactcatagtgccttcttctagaataaaatatgatcct
ttaaaagaagagaaacagctcatggaagcaaagcaacatgaactgaaaagaatagaagaa
gcaaaacaaaaagtagttgatcaagaacaacatctgccagaaaaacaggacacttttgca
gaaaaactagttacacagatcataaaaaaccttcaagtgaaaatttccagtatccatatt
cgttatgaagatgatatcacaaatcgagacagaccgctgtcatttggtatttcccttcaa
aatctcagcatgcagacaactgatcaatactgggttccatgtttacatgatgaaactgag
aaactagttcgaaagctaatccaattggataacctttttgcctattggaatgtgaagtct
cagattttttatcttaatgattatgatgactccttggacaacttgaggaatggcattgtc
agtgaaaatattgttccagaaggttatgattttgtatttcgacccatatctgctaatgcc
aaacttgtgatgaatcgccgatctgattttgacttttctgcccccaaaataaacttggat
gttgagttacataacatagcaattgaatttaataaatcacagtatttcagtattatggag
cttcttgaatcagttgatatgatgacccaaaatctgccatataggaagttcagacctgac
gtgcctcttcaccaccatgccagagaatggtgggcttatgctatacatggtgttcttgaa
gtaaatgtttgccccagattacggatgtggtcatggaaccatattagaaaacataggcaa
aaaatgaaacaatataaagaactgtataaaaaaaagttaacaagtaagaagccacctggt
gaacttcttgtgtctttggaggagttggagaaaaccttggatgtctttaatattactata
gctagacagcaggcagaagttgaggtaaagaaagctggatacaaaatttacaaagaagga
gtaaaagatccagaggataataaagggtggtttggctggctatggtcatggtcagaacaa
aaaactaatgaacagcaaccggatgttaaacctggaattcttgaagaaatgttgacacct
gaagaaaaagccttactctatgaagcaattgggtatagtgaaacagcagttgatccaact
ttgccaaaaacatttgaagccttgaagttttttgtccacttgaaaagtatgtctgttgtt
ctaagagaaaatcatcaaaaagcggagctgttagatattgtaatagaagaatttagcacc
ttaattgtgcaaagaccaggagcacaagcaataaaatttgaaactaaaatagattcattt
catattaccggcttaccagataattcaaaaaaaccccgcctcctgtcttcattggatgat
gcaatgtcactgttccaaattacatttgagataaatccaatagatgaaactgttactcag
aggtgtatcatagaagctgaacctttagaaatcatatatgatgcaaggacggtgaatagt
atagtggaattcttcagacctccaaaagaggtacatctagcacagctcacttcagcaact
ttgacaaaacttgaagaatttcgcaataagacagcaacaggtctactgtatattattgaa
acacagaaagttcttgatctcaaaattaatttgaaggcttcctatattattgtcccacaa
gatggaatttttagtcctacatcaaatctgcttcttttggatcttggtcatctaaaggtg
acaagtaaaagtcgttccgaattaccagatgtgaagcaaggtgaggccaatcttgaagag
ataatggatatagcttatgattcctttgatgttcagcttacaagcatacagctgctttac
agtagagttggtgacaattggagagaagcacgaaaactcaatgtgtccacccagcatatt
ttggtacccatgcacttcaatttggaactgtctaaggccatggttttcatggatgtaagg
atgcccaaattcaagatttttggaaagttaccgcttatttctttacgaatctcggataaa
aaactacaagggattatggaattgattgacagcattccgaaaccagaacctgtaactgaa
gtatctgcccctgtcaaatcattccagattcaaacatctgcttctttgggaacaacacag
atttcacagaaaataattcctctcttggaacttccatctgtttctgaagatgactcagag
gaggaattttttgatgcaccgtgtagtcccttggaagaacctcctcagtttccaagtgga
gttaaatgtattcgaaccagaaagttacaaaagccagattgttcagtaaatatgactacg
attaaaatacgatttgaagtaccaaaggttttgactgatttttatcaccttgttggagat
tgtgaactacctgtgatagaaatttatgttttaggattgggcacagaaattgagattaga
acatatgatttgaaagcaaatgcctttttgaaagagttctgcttaaaatgtccagaatac
ttagatgaaaacaagaaaccagtttatttgattacaacactggataacacaatggaagac
ctgttaacgctggaatatgtaaaggctgaaaagaacgtacccaacttgaaaagtacctat
aacaatgttttacagttgattaaggtaaatttttcctctttggatattcatttacacact
gaagcacttctgaatacaataaattatcttaataatattcttccacaatcagaggaaaaa
tcagccccagtgtccacagtgttcccagagactgaagacaaaggagatgtgattaaaaaa
ttagctttaaaactatccacgaatgaagatattattactttgcagattttagcagaatta
tcatgtttacagatctttattcaagatcagaaacgtaacatttctgaaattaagattgaa
gggcttgattctgagatgattatgaggccttcagaaactgaaataaatgcaaagctaagg
aatataattgttttagattctgatataacagctgtatacaaaaaggctgtttacatcact
ggaaaagaagttttcagcttcaaaatggtttcttacatggatgcaactgctggttctgca
tacacagatatgaatgtggttgacattcaggttgatttaatagttggttgcattgaagta
atttttgtcacaaaatttctgtattctatattggcttttatagataattttcaggcagct
aaacaagccttggctgaggcaactgttcaggcagctggaatggctgctactggtgtaaaa
gaactggcacaaaggagttccaggatggcactggatattcacgtcaaagccccagttgtg
gtcatcccacagtctccagtttcaaaaaatgtttttgttgctgattttggactcattaca
atgacaaatacctttcatatgataacagagagtgagagctctcccccacctgttattgat
ttgataacgataaagctgagtaaaatgcgactgtacagatctgaatatattaatgatgcg
taccaggaagtactggatctactactgccattaaatcttgaggtggtggttgaacgaaat
ttatcctgggagtggtaccaggaagttccttgttttaatgtaaatgctcagctgaaacca
atggagttcattcttagtcaagaagatataacaactatttttaaaacattgcatggcaat
atatggcatggagaaggtggcagtgcctcacctgctgtaacaaacgaccaatacagtgtc
actagtggagttacgactaatgcttcacaccattcaggaggatcaactgtggtgacagct
gctgtggtagaagtacattcatgtgcctcaccagttaagacaacactaaacgtgagcttc
aaaactgattatctcaccatggtgctgtatagtccaggtcctaaacaagcttcctttaca
gatgttcgtgatcctgctctgaaacttgctgaatttaaattggagaatattataagtact
ttaaaaatgtattcagatgactcaacattttcttccttctcattaaaaaactgtatttta
gatgataaaaggcctcatgtcaaaaaagcaactcctcgaatgataggactgacggttgga
tttgacaaaaaagatatgatggatataaagtacaggaaagtcagagatggttgtgtgact
gatgctgtctttcaagaaatgtatatttgtgcaagtgtagaatttttgcagactgttgca
aatgtctttcttgaggcctacaccacaggcactgctgtagaaaccagtgtgcaaacatgg
actgctaaggaagaagtacctacacaggaatcagagaaggtggaaattaatgttattatt
aaaaatcctgaaattgtgtttgtggctgacatgacaaaaaatgatgctcctgccttagtc
attacaacacaatgtgaaatttgctataaaggtgaccttgaaaatagtacaatgactgct
gctattaaagatctccaagtgagagcctgcccatttcttccagtcaagagaaaaggcaaa
atcactacggttttgcagccctgtgacttgttttatcaaactactcagataggtgcagat
ccacaagtgattgatatgtcagtaaaatccctgacactaaaggtttcaccagttattata
aataccatgattaccataacttcagcactgtatacaaataaggaaactctcccaaaagaa
acagcttcttctactgcacatttatgggaaaagaaggatacaaagactttgaaaatgtgg
tttcttgaagaatcaaatgaaactgaaaaaacagctcccacagctgaattggtacccaaa
ggcgagatgatgaaaatgaacattgattctatttttatagttcttgaggctggagttggt
catagaacagtgcctatgcttttggcaaagtcacgtttttcaggggaaggcaaaaactgg
agttccctaataaatctgcactgtcagcttgagctagaagtgcattattataatgaaatg
tttggtgtatgggagcctctgctcgaacccttagaaattgatcagactgagaattttaga
ccatggaatcttggtatcaagatgaaaaagaaagcaaaaaaggccattgttgagtcagat
cgtgaggaggaaaactacaaagtgccagaatataaaactgtcatcagtttccattcaaaa
gaccaattaaacattacgttatccaaatgtggtcttataatgttaaataatttagtcaag
gcatttacagaagctgccactggcttttcagctgacttcgtaagggatctagcaccattt
ataattttaaattcacttggacttactgtctctgtttcaccaagtgattcttttagtgta
ctcaacattcctatggcaaaatcatatgtactgaaaaatgaagagagtttaagtatggat
tatgtccgtaccaaggacaatgatcatttcagtgcaatgactagcctaagcagcaaactc
ttcttcattcttcttacacctgttaaccattctactgctgataagattcctttaacaaaa
gtggggcgacgtctgtacactgtaagacacagagattctggagttgaaagatctattgtt
tgtcaaattgaaacagtggaaggaagtaagaaggtcacaattcgctccccagtgcagata
agaaatcatttttcagtcccactctctgtttatgaaggggataccttattgggaactgtc
tcacctgaaaatgaattcaacgtaccattaggctcttaccgatcattcctttttctgaag
ccggaagacgaggactatcaaatgtgtgaaggaattgactttgaagagattataaaaaat
gatggtgctcttctaaagaagaaatgcagatctaaaaacccttctaagaaatcatttctc
attaatattgttccagaaaaagataatttaacatctctgtcagtgtattcagaagatggt
tgggatttaccatacataatgcatttgtggccacctatcctacttcgaaatcttcttcct
tacaaaattgcttattatatagagggaattgaaaattcagtttttactctaagtgaagga
cattcagcccagatttgtactgtacagttggatgaagccaggctacatttaaaattactt
gactatcttaatcatgattggaaaagtgaatatcacatagaggctaatcaacaagacatt
agtttcatcaattttacctgtgttacagaaatggaaaagactgatttagatattgctgtc
catatgacttataataccggtcagacagttgtggcatttcatagtccttattggatggtc
aataagactggtcgaatgttacagtacaaagcagatggaattcatcgaaagcatccacct
gattataaaaagccagttctcttttcttttcagccaaatcacttttttaataacaataag
gttcaacttatggtaactgatagtgagttgtctgatcagttttcaattgatactgttggt
agtcatggagctgttaaatgtaaaggcctgaaaatggaatatcaagttggtgtcaccata
gacctcagcagttttaacattactagaattgtgacatttacccctttttatatgattaaa
aacaaaagcaaataccgtgtatcagtggctgaagagggaagtggtaaatggctctctctt
gatttggagcagtgtatccccttttggcctgaggatgctgctagtaaacttcttattcaa
gttgaaaagagtaaagatcctcccaaaaggatatattttaacaagcaagaaaattgtatt
ttattgcgtctggataatgagcttggaggtattatagcagaagtgaatttggctgagcat
tctacagttattacatttttggattatcatgatggagcagccacattcctcttaataaat
cacaccaagaatgaacttattcaataccatcaaagttctctcagtgaaatagaagattcc
ctccctcctggaaaagcggtgttttatacgtgggctgatccagtgggctctagaacactg
aagtggagatgtagaaaaagcaatggtgatgtaacgcaaaaggatgatatgatgatggct
atagatttggggacaaagactgtttatttagtttcattcttcgaaggcttacaacgcatt
attttattcactgaagatccaaaggtatttaaagtaacatatgaaagtgagaaagcagag
ttagcagagcaagaaattgcagtggcattacaagatgttggaatttctcttgtcaacaat
tacgcaaagcaagaagtagcctatataggcattacaagttctgatgtggtttgggagaca
aagcccaagaagaagtcaagatggaagccaatgagtgtgaagcacactgagaagttagag
agagaatttaaggaatatactgaatcttcaccttcagaagataaggttgttgagttggac
actaacattccggtttgcttaacacctactggtcataacatgaaaattctgcagccgcat
gcaatagctctgagaagaaattatcttccagcattaaaaatggaatataacacatctgca
catcaatcattatttagaattcaaatttacagaatacagatccaaaatcaaatacatggt
gctgtatttccctttgtgttttatcctgttaaacctccaaagtcagtcaccatggattca
gcaccaaaaccctttacagatgtcagtattgtgatgagatctgcaggacattcccaaata
tcacgtattaagtatttcaaagtattgattcaagaaatggatctcaggttagatcttgga
tttgtctatgctttaacagaccttatgacagaagctgaggtgactgaaaatacagaggtt
gagctttttcataaagatatagaagctttccaagaagaatataaaacagtctcagtagat
caatcacaagtcagcctctatgaatattttcatatatctcctatcaagttacatttaagt
gtttcactgagttcgggcagagaagaagctaaagattcaaaacaaaatggaggactgatt
ccagttcattctttaaatcttttgctgaagagtattggtgccacactgacagatgtacaa
gatgtggtttttaagcttgcattttttgaactcaactatcagttccatacaacatccgac
ttacagtctgaagtcataagacactattcaaaacaggccattaagcagatgtatgtactg
attcttggacttgatgttttgggaaatccctttggcttaattagagaattttctgaaggt
gtagaagcatttttttatgaaccttaccagggagccatccagggtcctgaagagtttgtg
gagggaatggcactaggacttaaggcactagttggtggagctgttggtggattagctggt
gctgcctccaagatcaccggtgctatggctaaaggggtagcagctataactatggatgaa
gactaccaacagaagagaagagaagccatgaataagcaaccagctggttttagagaaggc
atcactcgtggaggaaaaggcttagtttctggatttgttagtggcataacaggaattgtt
acaaaaccaatcaaaggagctcaaaaagaaggagcagctggtttctttaaaggtgttggg
aagggtttagtgggagcagtagcaaggccaactggaggcatcatagacatggctagcagt
acatttcagggaataaaaagagctacagagacttctgaagtggagagtctgcgccctcct
cggttcttcaatgaagatggagttatcagaccttacaggttgagggatgggactggaaat
caaatgttacaggtcatggaaaatggaagatttgcaaaatacagatattttacccatgtc
atgatcaataaaacagatatgctgatgataaccagacgtggtgtattgtttgtaacaaag
gggacatttggacaactcacatgtgagtggcagtatagttttgatgaatttaccaaagaa
ccattcattgttcatgggagaagactgcgcattgaagcaaaggaacgagtgaagtctgta
tttcatgccagggagtttggaaaaataattaacttcaggaccccagaggatgccaggtgg
atcctaacaaagctagaagaagcaagagaaccctctccgagcctctga
DBGET
integrated database retrieval system
