Callithrix jacchus (white-tufted-ear marmoset): 100392833
Help
Entry
100392833 CDS
T03264
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100392833 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjc03021
]
100392833 (PCF11)
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100392833 (PCF11)
Transcription machinery [BR:
cjc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100392833 (PCF11)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100392833 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
100392833
NCBI-ProteinID:
XP_009005595
Ensembl:
ENSCJAG00000014595
UniProt:
U3E477
LinkDB
All DBs
Position
11:complement(53927711..53954952)
Genome browser
AA seq
1555 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSVSTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSSLGPGSAPSKLHVSQIPPMAVKAPHQVPVQSEKSRPGPSLQIQDLKGTNRDPRLN
RISQHSHGKDQSHRKEFLMNTLNQSDIKTSKTISSEKVNSSKQEKSKSSEKITKKELDQL
DSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKTDGKEDDVK
EKRKTAEKKDKDEHMKSSEHRLPGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRS
RSRSPKSRSPITHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPSSRE
DRNTKRSTKQDIRDPRRMKKSEEERPQEITNQHSTKSGIEPKENIENWQSSKSAKRWKSG
WEENKSLQQVDEHSKPPHLRHRESWSSTKGILSPRAPKQQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDDFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYED
SDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMIFEGPNKLSPRI
DGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ
AGGGGFRFEGSPSLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVG
GLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPH
GQSVSGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRI
EGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPG
QQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPG
NAFNASSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQF
GNFGNLPAPMTVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGFVQNPSGALPKAYP
DNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVSEVAAQPPLEEEEDQNEDQDVPDLTN
FTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVT
HRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAV
ESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVE
NPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPSEIKTENDTVESV
NT seq
4668 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtgctgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcgctcgaagacctgaccttcaatagcaagccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatt
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaagttacgttcc
acatgggatgaaatattcccattgaagaaactttatgccctggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctaccccccaatgtgaatacgtctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaggagccttcaacacctggtacggtggtc
agttcccctagcgtctccactcctccaattgttcctgatatacaaaagaatcttacacaa
gaacaactgataaggcagcagttgctggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtc
cagcaagaaacatccagtttaggtcctggatctgcaccatccaaattacacgtttcacag
attccccctatggcagttaaagctcctcatcaggttcctgtgcagtctgagaaaagccgt
ccaggaccatccttacaaattcaggatttgaaaggaactaaccgggatcctcgtctgaac
aggataagccaacattctcatggaaaagatcaaagtcacaggaaagaatttttaatgaac
acattaaaccagtctgatattaagacgagtaaaactatatcttctgaaaaagtaaattca
tccaagcaggaaaaaagtaaatcaagtgaaaaaataaccaagaaagaacttgaccaatta
gattctaaatcaaaatcaaaatcaaaatcgccatcacctttgaaaaacaaattatctcac
acaaaagacttgaaaaatcaagaatcggagagtatgaggttgtctgatatgaataagaga
gatccaagactaaaaaagcatcttcaggataagactgatggcaaagaagatgatgtgaaa
gagaaaagaaaaactgcagaaaaaaaggataaagatgagcacatgaagtcatctgaacac
agactgcctggaagtagaaataaaatcataaatggcattgtacaaaaacaggatacaata
acagaagagtcagaaaaacaggggacaaaaccagggagatcgagtactagaaagcgatct
agatctcgatcacccaagtctaggtcaccaattacacattccccgaagagaagagatagg
cggtcacccaaacgaaggcaaaggagtatgtctccaacatctacacctaaagctggaaag
attcgccaatctggagttaagcagtcacatatggaagagtttacaccatcttctagagaa
gacagaaatactaagagaagtactaagcaggatattcgggatccaaggcgaatgaaaaag
agtgaagaggagcgaccacaagaaatcacaaaccagcattctacaaagtcaggcattgaa
ccaaaggagaatatagaaaactggcaaagttccaaatctgccaaaagatggaaatctggt
tgggaagaaaataaaagcttacaacaggtcgatgaacatagtaaacctcctcatctaagg
catagggagagctggtcaagcactaaaggaattttatcacctcgagccccaaagcagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcctctggtgaaattacacaggat
gacttccttgttgttgtacatcaaattcgacagctatttcagtatcaagaaggtgtgcga
gaagagcagagatctccattcaatgatcgttttccacttaagcgacctcgatatgaagat
tcagataaaccatttgtagatagcccagcatcaagatttgctggcctggatacaaatcag
cgacttacagctttagctgaagacagaccattatttgatggacctagtaggccatcagta
acaagagatggcccaaccaagatgatttttgaaggacctaataaattaagccctcgaatt
gatggacctcccacaccagcttctcttcggtttgatgggtcaccaggacagatgggggga
ggaggccctttgagatttgaagggccacaaggtcagttaggaggtgggtgtcctttgaga
tttgaaggtcctccaggaccagtggggacacctctgcgatttgagggcccaattggtcaa
gcaggaggaggtggttttcggtttgaaggttcccctagtctgaggtttgagggatctgca
ggtggtttgcgatttgagggaccagggggccagcctgtgggtggtctgaggtttgaggga
catcgtggtcaacctgtgggcggtctaagatttgagggacctcatggtcagcctgtgggt
ggacttagatttgataatccccgaggtcagcctgtaggtggacttagatttgaggggggt
catggtccatcaggggctgcgattaggtttgatggacctcatggtcagccaggtggtggg
atcagatttgagggccctttgctacagcaaggagttggaatgaggtttgagggcccccat
ggtcagtcagtatctggtctgagatttgagggacaacataatcaacttggtgggaacctt
aggtttgagggtccacatggtcaaccaggggttgggatcaggtttgaaggccctttagtc
cagcaaggaggtggaatgaggtttgagggtccttctgtaccaggaggtggcctgcgaatt
gaagggcctctgggtcaaggtggtccaagatttgaaggctgtcatgctttaaggtttgat
gggcagccaggtcagccgtcactcttgccaagatttgatggattacatggtcagccaggt
cctagatttgaaaggactcctggtcagccaggccctcagaggtttgatggaccacctgga
cagcaggttcaaccaagatttgatggtgtacctcaaagatttgatggtccacaacatcag
caagcatcaaggtttgatattcctcttggtcttcaaggcacaagatttgacaatcatcct
tcacaaaggcttgaatcagtatctttcaatcagactgggccatataatgatccacctggc
aatgcttttaatgcctcgtcccaaggactacagttccaaagacatgaacaaatatttgat
tcacctcaaggaccaaattttaatggaccacatggccctggaaaccagagtttctctaat
ccacttaacagagcttctggacactattttgatgaaaaaaatcttcagagttctcaattt
ggaaactttggcaatttacctgctccaatgacagtaggaaacattcaggcatctcaacag
gttctaagcggtgttgctcagccagtagcttttggtcaaggacaacagtttttaccagtt
catccacaaaatcctggatttgttcagaatccttcaggagccctccctaaggcatatcct
gataatcatctcagtcaggtggatgtaaatgaattgttttcaaaattgctgaaaacagga
attctcaaattgtctcaacctgattcagctacaacacaagtaagtgaagtagctgctcag
cctccccttgaagaggaggaagatcaaaatgaagatcaagatgttccagatcttactaat
tttacagttgaagaattgaaacaacgttatgatagtgttataaatcgactgtacactggt
attcagtgttactcttgtggaatgaggtttacaacatcacagacagatgtatatgcagat
catttggactggcattatcggcaaaatagaactgaaaaggatgttagcagaaaagtcact
catagacgctggtactacagtttaacagactggatagaatttgaggagatagctgacctg
gaagaacgggcaaagagccagtttttcgaaaaggttcatgaggaagttgtgttaaaaact
caagaagctgctaaagaaaaagagttccaaagtgtacctgctggaccagctggagcagtt
gagagttgcgaaatctgtcaagaacaatttgaacagtactgggatgaagaagaggaggaa
tggcatttgaaaaatgctattagagtagatggaaagatttatcatccatcatgttatgaa
gattatcaaaatacatcttcatttgattgtacaccatcacccagcaagacaccagttgaa
aaccccttgaatattatgttgaacattgtcaaaaacgaattgcaggaaccctgtgaaagt
cccaaagttaaggaagaacgaattgatacaccaccagcttgtacagaggaaagcatagca
acaccctctgaaattaaaacagaaaatgacacagttgagtcagtttaa
DBGET
integrated database retrieval system
