Callithrix jacchus (white-tufted-ear marmoset): 100393328
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Entry
100393328 CDS
T03264
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X4
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03015
mRNA surveillance pathway
cjc03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100393328 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100393328 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjc03019
]
100393328 (CPSF6)
Messenger RNA biogenesis [BR:
cjc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
100393328 (CPSF6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
100393328
NCBI-ProteinID:
XP_003733846
Ensembl:
ENSCJAG00000001798
UniProt:
F7GUT5
LinkDB
All DBs
Position
9:68172671..68206675
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AA seq
551 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNR
NRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGI
ESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDR
ERDREREYRHR
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgtggaccacatagacatttacgcggatgtgggtgaagagttcaaccag
gaagctgaatatggtgggcatgatcagatagatttgtatgacgatgtcatatctccatct
gcaaataatggagatgccccagaagaccgggattacatggatactctcccaccaactgtt
ggtgatgatgtgggtaaaggagcggcaccaaatgttgtctatacgtatactggaaagaga
attgcattatatattggaaatctaacatggtggacgacagatgaagacttaactgaagca
gttcattctttgggagtaaatgatattttggagataaaattttttgaaaatcgggcaaat
ggccagtcaaaggggtttgcccttgttggtgttggatctgaagcatcttcaaaaaagtta
atggatctgttgcctaaaagagaacttcatggtcagaatcctgttgtaactccatgcaat
aaacagttcctgagtcaatttgaaatgcagtccaggaaaactacacaatcaggacaaatg
tctggggaaggtaaagctggtcctccaggagggagttctcgtgcagcatttccacaaggt
ggtagaggacggggccgttttccaggggctgttcctggtggggacagatttcctgggcca
gcaggaccaggagggccacccccaccttttccagctggacagactccaccacgtccaccc
ttaggtcctccaggcccacctggtccaccaggtcctccacctcctggtcaggttctgcct
cctcctctagctgggcctcctaatcgaggagatcgccctccaccaccagttctttttcct
ggacagccttttgggcagcctccattgggtccgcttcctcctggccctccacctccagtt
ccaggctacggcccccctcctggcccaccacctccacaacagggaccacctccacctcca
ggcccctttccacctcgtccacctggtccgcttgggccaccccttacactagctcctcct
ccgcatcttcctggaccacctccaggtgccccaccgccagctccgcatgtgaacccagct
ttctttcctccaccaactaacagtggcatgcctacatcagatagccgaggtccaccacca
acagacccatatggccgacctccaccatatgataggggtgactatggcccccctggaagg
gaaatggatactgcgagaacgccattgagtgaagctgagtttgaagaaatcatgaataga
aacagggcaatctcaagtagtgctatttcgagagctgtgtctgatgccagtgctggtgat
tatggaagtgctattgagacattggtaactgcaatttctttaattaagcaatccaaagta
tctgcagatgatcgttgcaaagttcttattagttctttgcaagattgccttcatggaatt
gagtccaagtcttacggttctggatcaagacgtgaacgatcaagagagagggaccatagt
agatcacgagaaaagagtcggcgccataaatcccgtagtagagaccgtcatgatgattat
tatagagagagaagcagagaacgagagaggcacagggatcgggaccgagaccgtgaccga
gagcgtgaccgagagcgcgagtatcgtcatcgttag
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