Entry |
|
Symbol |
DHX8
|
Name |
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
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KO |
|
Organism |
cjc Callithrix jacchus (white-tufted-ear marmoset)
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:cjc00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100394123 (DHX8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:cjc03041]
100394123 (DHX8)
Enzymes [BR:cjc01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100394123 (DHX8)
Spliceosome [BR:cjc03041]
Complex C
Other components
Step II factors
100394123 (DHX8)
|
SSDB |
|
Motif |
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Other DBs |
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LinkDB |
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Position |
5:66486353..66526118
|
AA seq |
1216 aa
MAVAVAMAGSVIGSEPGPAEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKN
TTFDTFKASLVKNGAEFTDSLISNLLRLIQTMRPPAKPSTSKDPVVKPKTEKEKLKELFP
VLCQPDNPSVRTMLDEDDVKVAVDVLKELEALMPSAAGQEKQRDTEHRDRTKKKKRSRSR
DRDRDRERNRDRDHKRRHRSRSRSRSRARERNKAKSRCRSRSRSQSPPKDRKDRDKYGER
NLDRWRDKHVDRPPPEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREG
RVANVADVVSKGQRVKVKVLSFTGTKTSLSMKDVDQETGEDLNPNRRRNLVGETNEETSM
RNPDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKWEIKQMIAANVLSKEEFPDFDEETG
ILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSALAK
ERRELKQAQREAEMDSIPMGLNKHWVDPLPDAEGRQIAANMRGIGMMPNDIPEWKKHAFG
GNKASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAE
AGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDG
MLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVK
FSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQE
EIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAET
SLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYT
ERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTL
GALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDK
QALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLG
IMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNR
QPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNR
YEEPNAWRISRAFRRR |
NT seq |
3651 nt +upstreamnt +downstreamnt
atggctgtggctgtagccatggcaggatccgtaatcgggtcggagccaggcccagcggaa
gaacttgccaaacttgaatacctgtctttggtgtcgaaggtttgcactgagctggacaat
cacttggggatcaacgacaaggacctagctgaatttgtgatcagtcttgctgagaaaaat
accacctttgatacttttaaggcttctctcgtcaaaaatggtgcagaatttacggattct
cttattagtaacttgctgcgtctcatacaaaccatgcgacctccagcaaagccttccact
agcaaagatccagttgttaaacctaaaacggaaaaagaaaagctgaaggaactcttccca
gtcctttgccaaccggacaacccttctgttcggaccatgttggatgaagatgatgtgaaa
gttgctgtggatgtcctgaaagaattggaagctttaatgcccagcgcagcaggccaggag
aaacaaagagacactgagcaccgggacaggacaaagaagaagaagcggagtcgaagccga
gatcgagaccgagatcgagaacgaaatcgagatagagaccacaagcggagacaccgatcc
cgctcgcgatcacgctctagggcccgggagaggaacaaagccaagtctagatgccggtcc
aggagcaggagtcagagtccccccaaagaccggaaggaccgggacaaatacggagagagg
aatctggatagatggcgggataagcatgtggaccgccctcctccagaagagcccaccatt
ggggacatttataatggcaaagttaccagcatcatgcagttcggttgctttgtgcagctg
gaaggactaaggaagcggtgggaaggcctggtgcacatttctgagctccgacgggaaggt
cgtgtggccaatgtagctgatgtggtgagcaaaggccagagggtcaaagtcaaagtgctg
tccttcaccgggaccaagaccagcctgagcatgaaggatgtggatcaagagactggagaa
gatctaaacccaaatagacgacgaaatcttgttggggagaccaatgaagagacctcaatg
cggaatcctgatagacccactcacctgtcccttgtcagtgcccctgaagtagaggatgac
tcactggaacgcaagcgcctcacccgaatctctgatccagagaagtgggagatcaaacag
atgatcgctgccaatgtcctttccaaggaagagtttccagacttcgatgaagagactggc
attctccctaaggtggatgatgaagaagatgaggaccttgagattgaattggttgaagaa
gagcctccattcctgagagggcacactaagcaaagcatggacatgagccccattaaaatc
gtcaagaacccagatggctccctctcccaagcagcaatgatgcaaagtgccttggccaaa
gaaaggcgggaactcaagcaggcccagcgggaagctgagatggattctattcccatgggg
ctcaacaaacactgggttgaccctctgcctgatgcggaaggcagacagattgctgccaac
atgaggggtattgggatgatgcccaatgatattcctgagtggaagaaacatgcttttggg
ggcaacaaagcctcttatgggaaaaagacccagatgtcaatcattgaacagcgggagagc
ctgcccatctacaaactgaaggagcagttggtccaggccgtccatgacaatcagatcctg
attgttattggtgagacaggatctggaaagacaacacagatcacccagtacctggcggag
gcaggctacacttccaggggcaagattgggtgtacccagcccagaagagtggcagcaatg
tcagtggccaaaagggtgtcggaggagtttggttgttgcttaggccaagaggtgggctac
accattcgatttgaggactgcactagccctgaaacagtcatcaagtacatgacagatgga
atgttgcttagggagtgcttgattgaccctgacctcactcagtatgcaatcatcatgttg
gacgaggcacatgagaggacaattcacactgatgtgctctttggattgttgaaaaagaca
gttcagaaacggcaggacatgaagctgattgtcacctcagccaccttggatgcagtgaag
ttttctcaatacttctatgaagctcccattttcaccatcccaggtcgaacatatccagtg
gaaatactgtacacaaaggaacctgagacagattatctggatgccagcctgataactgtt
atgcagatccatttaacagagccaccaggtgatatcctggtcttcctgactggtcaggaa
gagattgatactgcttgcgagatcctgtatgaaagaatgaaatccctgggacctgatgtt
ccggagttaattatcctcccagtgtactctgctcttcccagtgagatgcagacccgaatc
tttgacccagctccaccaggcagcagaaaggttgtgattgccaccaatatcgcagagacg
tcgctgactattgatggcatctactacgtggtggacccaggattcgtgaagcagaaagtt
tacaattccaagacggggattgaccagcttgtggtgacgcctatttctcaggctcaggca
aagcaacgagctggcagagctgggagaacaggcccagggaagtgttacagactatataca
gaacgtgcctaccgagatgaaatgctcaccaccaacgtgccggaaattcagagaaccaac
ttagcaagcacggtgctgtcactcaaggccatgggtatcaatgacctgctgtcctttgat
ttcatggatgccccaccaatggaaactttgatcactgccatggagcagctgtatacactg
ggggccctggacgatgagggcctgctcactcgcttgggccgccggatggcagagtttcct
ctggagccaatgctatgcaaaatgctcatcatgtctgtgcatctgggctgcagtgaggaa
atgctgaccattgtatccatgctgtctgtgcagaacgtcttctataggcccaaggataaa
caagcccttgcagatcagaagaaggccaaattccaccagaccgaaggggaccacctcacc
ctgctagctgtgtacaactcctggaagaataacaagttctccaacccatggtgctatgag
aactttatccaggctcgttccctgcgccgggcccaggacattcgcaagcagatgttaggc
ataatggacagacataagctggatgttgtttcctgtggcaagtccacagtccgagtacag
aaggccatctgcagtgggttcttccgtaatgccgccaagaaagacccgcaggagggttac
cggaccctgatcgaccagcaggtggtctacatccatccttccagtgccctcttcaacaga
cagccagaatgggtcgtataccatgagctggtgctgaccaccaaggaatacatgcgtgag
gttaccaccatcgacccgcggtggcttgtggagtttgccccggctttctttaaggtctcc
gacccaactaagctaagcaaacagaagaagcagcagcgtctggaacccctgtacaaccgc
tatgaggaacccaatgcctggagaatatcccgggccttccgacggcgctga |