Callithrix jacchus (white-tufted-ear marmoset): 100394494
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Entry
100394494 CDS
T03264
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04611
Platelet activation
cjc04820
Cytoskeleton in muscle cells
cjc04926
Relaxin signaling pathway
cjc04933
AGE-RAGE signaling pathway in diabetic complications
cjc04974
Protein digestion and absorption
cjc05146
Amoebiasis
cjc05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100394494 (COL3A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
100394494 (COL3A1)
09152 Endocrine system
04926 Relaxin signaling pathway
100394494 (COL3A1)
09154 Digestive system
04974 Protein digestion and absorption
100394494 (COL3A1)
09160 Human Diseases
09174 Infectious disease: parasitic
05146 Amoebiasis
100394494 (COL3A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
100394494 (COL3A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100394494 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100394494 (COL3A1)
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100394494 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
100394494
NCBI-ProteinID:
XP_002749597
Ensembl:
ENSCJAG00000005210
UniProt:
F7FL95
LinkDB
All DBs
Position
6:complement(36544318..36583211)
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AA seq
1465 aa
AA seq
DB search
MMSFVQKGSWLLLALLHPTVILAQQEAVEGGCSHLGQTYADRDVWKPEPCQICVCDSGSV
LCDDIICDDQELDCPNPEIPFGECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRN
GDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLGGYPGPAGPPG
PPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGTMGPSGPAGKDGESGRPGRPG
ERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMG
PRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG
SSGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLIGARGPPGPPG
ANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGTPGIPGAKGEDGKDGSPGEPGANGLPG
AAGERGAPGFRGPAGPNGVPGEKGPAGERGAPGPAGPRGAAGEPGRDGLPGGPGMRGMPG
SPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPG
GPGPQGPAGKNGETGPQGPPGPTGPGGDKGDTGPPGPPGLQGLPGTGGPPGENGKPGEPG
PKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGPAGPPGPPGTAG
SPGLQGMPGERGGPGSPGPKGDKGEPGGAGADGVPGKDGPRGPTGPIGPPGPAGQPGDKG
EGGAPGLPGIAGPRGGPGERGEPGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPG
VAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGNNGNPGPPGPGGSPG
KDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAG
PPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDG
LPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKSGDRGETGPAGPAGAPGPAG
ARGAPGPQGPRGDKGETGERGANGIKGHRGFPGNPGAPGSPGPAGHQGAVGSPGPAGPRG
PVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGG
AAAIAGIGGEKAGGFAPYYGDEPMDFKINTDEIMNSLKSVNGQIESLISPDGSRKNPARN
CRDLNFCHPELKSGEYWIDPNQGCKLDAIKVFCNMETGETCISASPSSVPQKHWWTDSGA
EKKHVWFGESMDGGFQFSYGNPELPEDILDVQLAFLRLLSSRASQNITYHCKNSIAYMDQ
ASGNVKKALKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWSKTVFEYRTRKAVRLPI
VDIAPYDIGGPDQEFGVDVGPVCFL
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaggggagctggctacttcttgctctgcttcatcccactgtt
attttggcacaacaggaagctgtcgaaggaggatgttcccatcttggccagacctatgcg
gatcgagatgtctggaagccagaaccatgccaaatatgtgtctgtgactcaggatccgtt
ctctgcgacgacataatatgtgacgatcaggaattagactgccccaacccagaaattcca
tttggagaatgttgcgcagtttgcccacagcctccaactgctcctactcgccctcctaat
ggccaaggacctcaaggcccaaagggagatccaggccctcctggtattcctgggagaaat
ggtgaccctggtattccaggacaaccaggttcccctggttctcctggccctcctggaatc
tgtgaatcatgccctactggtcctcagaactattctccccagtatgattcatatgatgtc
aagtctggagtagcagtaggaggactcggtggctatcctgggccagctggccccccaggt
cctcccggtccccctggtacatctggtcatcctggttcccctggatctccaggataccaa
ggaccccctggtgaacctgggcaagctggtcctgcaggccctccaggacctcctggtact
atgggtccatctggtcctgctggaaaagatggagagtcaggtagaccaggacgacctgga
gagcgaggattgcctggacctccaggtattaaaggtccagctggaatacctggattccct
ggtatgaaaggacacagaggctttgatggacgaaatggagaaaagggtgaaacaggtgct
cctggcttaaagggtgaaaacggtcttccaggtgaaaatggagctcctggacccatgggt
ccaagaggggctcctggtgagagaggacggccaggacttcctggagccgcaggtgctcgg
ggtaatgacggtgctcgaggcagtgatggtcaaccaggccctcctggtcctcctggaact
gccggattccctggatcccctggtgctaagggtgaagttggacctgcaggctctcctggt
tcaagtggtgcccctggacaaagaggagaacctggacctcagggacatgctggtgctcaa
ggtcctcctggccctcctgggattaacggtagtcctggtggtaaaggcgaaatgggtcct
gctggcattcctggagctcctggactgatcggagccaggggtcctccaggaccacccggt
gctaatggtgctcctggactgcgaggtggtgcaggtgagcctggtaagaatggtgccaaa
ggagagccaggaccacgaggtgaacgcggtgaggctggtactccaggtattccaggagct
aaaggtgaagatggcaaggatggatcacctggagaacctggtgcaaatgggcttccagga
gctgcaggagaaaggggtgcccctgggttccgaggacctgctggaccaaatggtgttcca
ggagaaaagggtcccgctggagagcgtggtgctccaggacccgcagggcccagaggagca
gctggagaacccggcagagatggtctccctggaggtccaggcatgaggggcatgcccgga
agtccaggaggaccaggcagtgatgggaaaccagggcctcccggaagtcaaggagaaagt
ggtcgaccaggtcctcctgggccatctggtccccgaggtcagcctggtgtcatgggtttc
cccggtcctaaaggaaatgatggtgctcctggtaagaatggagaacgaggtggccctgga
ggacctggccctcagggtcctgctggaaagaatggtgaaactggacctcagggaccccca
gggccaactgggcctggtggtgacaaaggagacacaggaccccctggtccacctgggtta
caaggcttgcctggaacaggtggtcctccaggagaaaacggaaaacctggggaaccaggt
ccaaagggtgatgctggtgcacctggagctccaggaggcaagggtgacgctggtgcccct
ggcgaacgtggacctcctggattggcaggggccccaggacttagaggtggagctggtcct
cctggtcccgaaggaggaaagggacctgctggtcctcctgggccacctggtactgctggt
agtcctggtctgcaaggaatgcctggagaaagaggaggtcctggaagtcctggtccaaaa
ggtgacaagggtgaaccaggcggcgcaggtgctgatggtgtcccagggaaagatggtcca
aggggtcctactggtcctattggtcctcctggtccagctggccagcctggagataagggt
gaaggtggtgcccccgggcttccaggtatagctggacctcgtggtggccctggtgagaga
ggtgaacctggccctccaggacctgctggcttccctggtgctcctggacaaaatggtgaa
cctggtggtaaaggagaaagaggggctccaggtgagaaaggtgaaggaggccctcctgga
gttgcaggaccccctggaggttctggacctgctggtcctcctggtccccaaggcgtcaaa
ggtgaacgtggcagtcctggtggacccggtgctgctggcttccctggtgctcgtggtctt
cctggtcctcctggtaataacggtaacccaggacccccaggtcctggcggttctccaggc
aaggatgggcccccaggtcctgcaggtaacactggtgctcctggcagccccggagtgtct
ggaccaaaaggtgatgctggccaaccaggagaaaagggatcacctggtgcccagggcccc
ccaggagctccgggcccacttggaattgctggaattacaggagcacggggtcttgcagga
ccaccaggcatgccaggtcctaggggaagccctggccctcagggcgtcaagggtgaaagt
ggaaaaccaggtgctaatggtctcagtggagaacgtggtccccctggaccccagggtctt
cctggtttggctggtacagctggtgaacctggaagagatggaaaccctggatcagatggt
cttccaggccgagatggatctcctggtggcaagggtgatcgtggtgaaaatggttctcct
ggtgcccctggtgctcctggtcatccaggcccacctggtcctgtcggtccatccggaaag
agtggtgacagaggagaaactggtcctgctggccctgctggtgctcctggtcctgctggt
gcccgaggtgctcctggtcctcaaggcccacgtggtgacaaaggtgaaacaggtgaacgt
ggcgctaatggcatcaaaggacatcgaggattccctggtaatccaggtgccccaggctct
ccaggtcctgctggtcaccagggtgcagtcggtagtccaggacctgcaggccccagagga
cctgttggacccagtgggcctcctggcaaagatggaaccagtggacatccaggtcccatt
ggaccaccagggcctcgaggtaacagaggtgaaagaggatctgagggctccccaggccac
ccagggcaaccaggcccccctggacctcctggtgcccctggtccttgctgtggtggtgga
gccgctgccattgctgggattggaggtgaaaaagctggcggttttgccccatattatgga
gatgaaccaatggatttcaaaatcaacaccgatgagattatgaattcactcaagtctgtt
aacggacaaatagaaagcctcattagtcctgatggttctcgtaaaaaccctgctagaaac
tgcagagacctgaatttctgccatcctgaactcaagagtggagaatattggattgaccct
aaccaaggatgcaaattggatgctatcaaggtattctgtaatatggaaactggggaaaca
tgtataagtgccagtccttcgagtgttccacagaaacactggtggacagactctggtgct
gagaagaaacacgtttggttcggagagtccatggatggtggttttcagtttagctatggc
aatcctgaacttcctgaagatatccttgatgtgcagctggcattccttcgacttctctcc
agccgagcctcccagaacatcacatatcactgcaaaaatagcattgcatacatggatcag
gccagtggaaatgtaaagaaggctctgaagctgatggggtcaaatgaaggtgaattcaag
gctgaaggaaatagcaaattcacctacacggttctggaggatggttgcacgaaacacact
ggggaatggagcaaaacagtctttgagtatcgaacacgcaaggccgtgagactacctatt
gtagatattgcaccctacgacattggtggtcctgatcaagaatttggtgtggacgttgga
cctgtttgctttttataa
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integrated database retrieval system
