Callithrix jacchus (white-tufted-ear marmoset): 100394655
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Entry
100394655 CDS
T03264
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100394655 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cjc01009
]
100394655 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cjc04515
]
100394655 (PCDH20)
Protein phosphatases and associated proteins [BR:
cjc01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100394655 (PCDH20)
Cell adhesion molecules [BR:
cjc04515
]
Cadherins
Protocadherins
100394655 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
100394655
NCBI-ProteinID:
XP_035152552
Ensembl:
ENSCJAG00000016415
UniProt:
F6UMF4
LinkDB
All DBs
Position
1:53442932..53449774
Genome browser
AA seq
952 aa
AA seq
DB search
MRGRGNARSSRALAVSWCPATWHPRLDMGRLPRPRSSTSHRNLPHLFLFVLFVGPFSCLA
SYSRATELLYSLNEGLPAGVLIGSLAEDLRLLPGAAGRRDAQSQLPEHTGAEWNPPLSFS
LASRGLSGQYVTLDNRSGELHTSAQEIDREALCLEGGGGSSWGGSVSISSSPSSDSCLLL
LDVLVLPQEYFRFVKVKIAIRDINDNAPQFPVSQISVWVPENAPVNTRLAIEHPAVDPDV
GINGVQTYRLLDYHGMFTLDVEENENGERTPYLIVMGALDRETQDQYVSIIIAEDGGSPP
LLGSATLTIGISDINDNCPLFTDSQINVTVYGNATVGTPIAAVQAVDRDLGTNAQITYSY
SQKVPQASKDLFHLDENTGIIKLFSKIGGNVLQSHKLTILANGPGCIPAVITALVSIIKV
VFRPPEIVPRYIANEIDGVVYLKELEPINTPIAFFTIRDPEGKYKVNCYLDGEGPFRLSP
YKPYNNEYLLETTKPMDYELQQFYEIAVVAWNSEGFHVKRVIKVQLLDDNDNAPIFLQPL
IELTIEENNTPNAFLTKLHATDADSGERGQVSYFLGPDAPSYFSLDSVTGILTVSTQLDR
EEKEKYRYTVRAVDCGKPPRESVATVALTVLDKNDNSPRFINKDFSFFVPENFPGYGEIG
VISVTDADAGRNGWVALSVVNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGE
PALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAV
IAYSIIGRRGPRPESFRIDPKTGNITLEEALMQTDYGLHRLLVKVSDHGYPEPLHSTVMV
NLFVNDTVSNESYIESLLRKEPEISIEEKEPQISIEPTHRKVESLSCMPTLVALSVISLG
SITLVTGMGIYICLRKGKKHPREDENLEVQIPLKGKIDFHMQERKPMDISNI
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggccgagggaatgcgcgcagctcgcgggccctggcagtgagctggtgcccggcg
acctggcacccgcgcctggatatggggcgtctacctcgtcccaggagcagcaccagccac
aggaacctgccgcatctgtttctgtttgtcctcttcgtgggacccttcagctgcctcgcg
agttacagccgggccaccgagcttctgtacagcctaaacgagggactgcccgccggggtg
ctcatcggcagcctggccgaggacctgcggctgctgcccggggctgcagggaggcgggac
gcgcagtcgcagctgccagagcacaccggtgctgagtggaacccccctctctccttcagc
ctggcctcccggggactgagtggccagtacgtgaccctagacaaccgctctggggagctg
cacacttcagctcaggagatcgacagggaggccttgtgtcttgaagggggcggagggtcc
tcgtggggcggcagcgtttccatctcctcctctccttcttctgactcttgccttttgctg
ctggatgtgcttgtcctgcctcaggaatacttcaggttcgtgaaggtgaagatcgccatc
agagacatcaatgacaacgctccgcagttccctgtttcccagatctcggtgtgggtcccg
gaaaatgcacctgtaaacacccgattggccatagagcatcctgctgtggacccagatgta
ggcattaatggggtgcagacctatcgcttactggactaccatggtatgttcacccttgac
gtggaggagaatgagaatggagagcgcaccccctacctaattgtcatgggtgctttggac
agggaaacccaggaccagtatgtgagcatcatcatagctgaggatggtgggtctccacca
ctgctgggcagtgccaccctcaccattggcataagtgacattaatgacaattgccctctg
ttcacagactcacaaatcaatgtcactgtgtatggaaatgctacagtgggtaccccaatt
gcagctgtccaggctgtggatagagacttggggaccaatgctcaaattacctattcttac
agtcagaaagttccacaagcatctaaggatttatttcacctggatgaaaacaccggcatt
attaaacttttcagtaagattggaggaaatgttctgcaatcccacaagctcaccatcctt
gctaatggaccaggctgcatccctgctgtaatcaccgctcttgtgtccattatcaaagtt
gttttcagaccccctgaaattgtccctcgttacatagcaaacgagatagatggtgttgtt
tatctgaaagaactggaacccattaacactcccattgcgttttttaccataagagatcca
gaaggtaaatacaaggttaactgctacctggatggtgaagggccatttaggttatcaccc
tataaaccatacaataatgaatatttactagagaccacaaaacctatggactatgagcta
cagcaattctatgaaatagctgtggtggcttggaactctgagggatttcatgtcaaaaga
gttattaaagtacaacttttagatgataatgataatgctccaattttccttcaaccctta
atagaactaaccatcgaagaaaacaacacacccaatgcctttttgactaagctacatgct
acagatgccgacagtggagagagaggccaagtttcatattttctgggacctgatgctccg
tcatatttttccttagacagtgtcacaggaattctgacagtttctactcagctggaccga
gaagagaaagaaaagtacagatacactgtccgagctgttgactgtgggaagccacccagg
gaatcagtagccactgtggccctcacagtgttggataaaaatgacaacagtcctaggttt
atcaacaaggacttcagcttttttgttcctgaaaactttccaggctatggtgagatagga
gtaattagtgtaacagatgctgatgctgggcgaaatggctgggtcgccctctcggtggtg
aaccagagtgatatttttgtcatagatacaggaaagggcatgctgagggctaaagtctct
ttggacagagagcagcaaagctcctatactttgtgggttgaagctgttgatgggggtgag
cccgccctctcctctactgcaaaaatcacaattctccttctagatatcaatgacaaccct
cctcttgttttatttcctcagtctaacatgtcttatctgttagtactgccttctactctc
cctggctccccagttacagaagtctatgctgtcgacaaagacacaggcatgaatgctgtc
atagcttatagcatcatagggagaagaggtcccaggcctgaatcctttaggattgaccct
aaaactggcaacattactttggaagaggcattaatgcaaacagattatgggctccatcgc
ttactggtgaaagtcagtgaccatggttatcccgagcctctccactccacggtcatggtg
aacctatttgtcaatgacactgtcagtaatgagagttacattgagagtcttttaagaaag
gaaccagagattagcatagaggagaaagaaccacagatctcaatagaaccaactcataga
aaggtagaatctctgtcctgtatgcccaccttagtagctctgtctgtaataagcttgggt
tccatcacactggtcacaggaatgggtatatacatctgtttaaggaaagggaaaaaacac
cccagggaagatgaaaatttggaagtacagattccactgaaaggaaaaattgacttccat
atgcaagagagaaagccaatggatatttctaatatttga
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