Callithrix jacchus (white-tufted-ear marmoset): 100394853
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Entry
100394853 CDS
T03264
Symbol
COL5A2
Name
(RefSeq) collagen alpha-2(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04820
Cytoskeleton in muscle cells
cjc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100394853 (COL5A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100394853 (COL5A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100394853 (COL5A2)
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100394853 (COL5A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
100394853
NCBI-ProteinID:
XP_002749598
Ensembl:
ENSCJAG00000005283
LinkDB
All DBs
Position
6:36376496..36526813
Genome browser
AA seq
1499 aa
AA seq
DB search
MMANWAEARPLLILTVLLGQFVSIKAQEEGEDEGYGEEIACTQNGQMYLNRDIWKPAPCQ
ICVCDNGAILCDKIECQDVLDCADPVTPPGECCPVCSQTPGGGNTNFGRGRKGQKGEPGL
VPVVTGLRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPS
HPGPDGMSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPG
EPGDPGPMGPIGTRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKG
HRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHG
MPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPG
AIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAG
PKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKG
AQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPG
PPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPG
LAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERG
EPGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDAGPPGLQGMPGERGIAGTPGPKGDRG
GIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENG
PTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRG
TQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAG
PPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVG
PTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPG
SQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRG
QKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNSGPLGPIGPPG
VRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDDSMPDPLPEFTEDQAAPDD
KNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSV
EDAIKVYCNMETGETCISANPSSVPRKTWWASKSPDHKPVWYGLDMNRGSQFVYGDHQSP
NTAITQMTFLRLLSKEASQNITYVCKNSVGYMDDQAKNLKKAVVLKGANDLDIKAEGNIR
FRYIVLQDTCSKRNGNVGKTVFEYRTQNVARLPIIDLAPVDVGGTDQEFGVEIGPVCFV
NT seq
4500 nt
NT seq
+upstream
nt +downstream
nt
atgatggcaaactgggcggaagcaagacctctcctcattcttactgttttattagggcaa
tttgtctcaataaaagcccaggaagaaggcgaggatgaaggatatggtgaagaaatagcc
tgcactcagaatggccagatgtacttaaacagggacatttggaaacctgccccttgccag
atctgtgtctgtgacaatggagccattctctgtgacaagatagagtgccaggatgtgctg
gactgtgccgaccctgtaacaccccctggggagtgctgtcctgtctgttcacaaacacct
ggaggtggcaatacaaattttggtagaggaagaaagggacaaaaaggagaaccaggatta
gtgcctgttgtaacaggcctacgtggtcgcccaggaccagcaggacctccgggatcacag
ggaccaagaggagagcgagggccaaaaggaagacctggtcctcgtggacctcagggaatt
gatggagaaccaggtgttcctggtcaacctggtgctccaggacctcctggacatccgtcc
cacccaggacctgatggcatgagcaggccgttttcagctcaaatggctgggttggatgaa
aaatctggacttgggagtcaagtgggactaatgcctggctctgtgggtcctgttggccca
aggggaccacaaggtttacaaggacagcaaggtggtgcaggacctacaggacctcctggt
gaacctggtgaccctggaccaatgggtccgattggtacacgtggaccagagggccctcct
ggtaaacctggggaagatggtgaacctggcagaaatggaaatcctggtgaagtgggattt
gcaggatctccgggagcgcgtggctttcctggggctcctggtcttccaggtctgaagggt
caccgaggacacaaaggtcttgaaggccctaaaggtgaagttggagcacctggatccaag
ggtgaagcaggccctactggtccaatgggtgccatgggtcctctgggtccaaggggaatg
ccaggagagagagggagacttgggccacagggtgctcctggacaacgaggtgcacatggt
atgcctggaaaacctggaccaatgggtcctcttgggataccaggctcttctggttttcca
ggaaatcctggaatgaagggagaagcaggtccaacaggagcacgaggccctgaaggtcct
caggggcagagaggtgaaactgggcccccaggtccagttggttctccaggtcttcctggt
gcaataggaaccgatggtactcctggtgccaaaggcccaacgggctctccgggtacttct
ggtcctcctggctcagcagggcctcctggatctccaggacctcagggtagcactggtcct
cagggaattcgaggccaaccgggtgatccaggagttccaggtttcaaaggagaagctggc
ccaaaaggagaaccaggaccacatggtattcagggtccgataggtccacctggtgaagaa
ggcaaaagaggtcctcgaggtgacccaggaacagttggtcctccagggccagtaggagaa
aggggtgctcctggcaatcgtggttttccaggctctgatggtttaccggggccaaagggt
gctcaaggagaacggggtcctgtaggttcttcaggacccaaaggaagccagggggatcca
ggacgtccaggcgaacctgggcttccaggcgctcggggtttgacaggaaatcctggtgtt
caaggtcctgaaggaaaacttggacctttgggtgctccaggggaagatggccgtccaggt
cctccaggctccataggtatcagagggcagcctgggagcatgggtcttccaggccccaaa
ggtagcagtggtgaccctgggaaacctggagaagcaggaaatgctggcgttcctgggcag
aggggagctcctggaaaagatggtgaagttggtccttctggtcccgttggcccaccgggt
ttagctggtgaaagaggagaacagggacctccaggccccacaggttttcaggggcttcct
ggtcctccagggcctcctggagaaggtggaaagccaggtgatcaaggtgttcctggagat
cccggagcagttggcccactaggacctagaggagaacgaggaaatcctggggaaagagga
gaaccgggaataactggactccccggtgagaagggaatggctggaggacatggtcctgat
ggcccaaagggcagtccaggtccatctgggacccctggagatgcaggtccaccaggtctt
caaggtatgccaggagaaagaggaattgcaggaactcctggccccaagggtgacagaggt
ggcataggagaaaaaggtgctgaaggcacagctggaaatgatggtgccagaggtcttcca
ggtcctttgggccctccaggtcctgcaggtcctactggagaaaagggtgaacctggtcct
cgaggtctagttggccctcctggctcccggggcaatcctggttctcgtggtgaaaatggc
ccaactggagctgttggttttgctggaccccagggtcctgatggacagcctggagtaaaa
ggtgaacctggggagccaggacagaagggagatgctggttctcctggaccacaagggtta
gcaggatcccctggccctcatggtcctaatggtgttcctggactaaaaggtggtcgagga
acccaaggtccgcctggtgctacaggatttcctggttctgctggcagagttggacctcca
ggccctgctggagctccaggacccgcggggcccttaggggaacctgggaaagagggacct
ccaggtcttcgtggggaccctggctctcatgggcgtgtgggagatcgaggaccagctggc
ccccctggtggcccaggagacaaaggggacccaggagaagatgggcaacctggtccagat
ggcccccctggtccagctggaactaccggtcagagaggaattgttggcatgcctgggcaa
cgtggagagagaggcatgcctggcctgccaggcccagcgggcacaccaggaaaagtagga
ccaactggtgcaacaggagataaaggtccacctggacctgtgggacccccaggttccaat
ggtcctgtaggggaacctggaccagaaggtccagctggtaatgatggtaccccaggacgg
gatggtgctgttggagaacgtggtgatcgtggagaccctgggcctgcaggtctgccaggc
tctcagggtgcccctggaactcctggccctgtgggtgctccaggagatgcaggacaaaga
ggagatccgggatctcggggtcctataggaccacctggtcgagctgggaaacgtggatta
cctggaccccaaggacctcgtggtgacaaaggtgatcatggggatcgaggagacagaggt
cagaagggccacagaggctttactggtcttcagggtcttcctggccctcctggtccaaat
ggtgaacaaggaagtgctggaatccctggaccatttggcccaagaggtcctccaggccca
gttggtccttcgggtaaagaaggaaactctgggccacttgggccaattggacctccaggc
gtacgaggcagtgtaggagaagcaggacctgagggcccacctggtgaacctggtccacct
ggccctccaggtccccctggccaccttacggctgctcttggggatatcatggggcactac
gatgatagcatgccagatccacttccagagtttactgaagatcaggcagctcctgatgac
aaaaacaaaacagacccaggggttcatgctaccttgaagtcactcagtagtcagattgaa
accatgcgcagccctgatggctcaaaaaagcacccagcccgcacatgtgatgacttaaag
ctttgccattccgcaaagcagagtggtgaatactggattgatcctaaccaaggatctgtt
gaggatgcaatcaaagtttactgcaacatggaaacaggagaaacatgtatttcagcaaac
ccgtccagtgtaccacgtaaaacctggtgggccagtaaatctcctgaccataagcctgtt
tggtatggtcttgatatgaatagaggatctcagtttgtttatggagatcaccaatcacct
aacacagccattactcagatgaccttcttgcgccttttatcaaaagaagcctcccagaat
attacttacgtctgtaaaaacagtgtaggatacatggatgatcaagctaagaacctcaaa
aaagctgtggttctcaaaggggcaaatgacttagatatcaaagcagagggaaatattaga
ttcagatatatagttcttcaagacacttgctccaagcgaaatggaaatgtgggcaagact
gtctttgaatatagaacacagaatgtggcacgcttgcccatcatagatcttgcccctgtg
gatgttggcggcacagaccaggaattcggcgttgaaattgggccagtttgttttgtgtaa
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