Callithrix jacchus (white-tufted-ear marmoset): 100394953
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Entry
100394953 CDS
T03264
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04151
PI3K-Akt signaling pathway
cjc04382
Cornified envelope formation
cjc04510
Focal adhesion
cjc04512
ECM-receptor interaction
cjc04820
Cytoskeleton in muscle cells
cjc04926
Relaxin signaling pathway
cjc04933
AGE-RAGE signaling pathway in diabetic complications
cjc04974
Protein digestion and absorption
cjc05146
Amoebiasis
cjc05165
Human papillomavirus infection
cjc05200
Pathways in cancer
cjc05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100394953 (COL4A6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100394953 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100394953 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100394953 (COL4A6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
100394953 (COL4A6)
09154 Digestive system
04974 Protein digestion and absorption
100394953 (COL4A6)
09158 Development and regeneration
04382 Cornified envelope formation
100394953 (COL4A6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100394953 (COL4A6)
09162 Cancer: specific types
05222 Small cell lung cancer
100394953 (COL4A6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100394953 (COL4A6)
09174 Infectious disease: parasitic
05146 Amoebiasis
100394953 (COL4A6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100394953 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cjc04147
]
100394953 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100394953 (COL4A6)
Exosome [BR:
cjc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100394953 (COL4A6)
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100394953 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100394953
NCBI-ProteinID:
XP_035145207
Ensembl:
ENSCJAG00000007564
UniProt:
F7I774
LinkDB
All DBs
Position
X:complement(100814165..101099546)
Genome browser
AA seq
1705 aa
AA seq
DB search
MHPGLWLLLVTLCLTEELAGAGEKSYGKPCGGQDCSGSCKCFPEKGARGRPGPIGIQGPT
GPQGFAGPTGLSGLKGERGSPGPLGPDGPKGDKGPMGVPGFLGINGIPGHPGQPGPRGTP
GLDGYNGTQGAVGFPGPSGYPGLLGPPGLPGQKGSKGDPVLAPGSFKGMKGDPGLPGLDG
ITGPQGAPGSPGAVGPTGPPGLQGLPGPPGPPGPDGNMGLGFQGEKGVKGDVGLPGPAGP
PPSTGELEFMGFPKGKKGSKGEPGPKGFPGISGPPGFPGLGTTGEKGEKGIPGLPGPRGP
MGSEGVQGPPGKQGKKGSPGFPGLNGFQGIEGEKGDIGLPGPDVFIDIDGAVISGNPGDP
GVPGLPGLKGDEGIQGLRGPSGVPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGAAG
LPGRDGLPGPPGPPGPPSPEFETETLHNKEPGFPGLRGEQGPKGNPGLKGVKGDSGFCAC
DSGVPSNGLPGEPGPPGPQGLIGLPGLKGARGDRGSGGAQGPAGSPGFHGRPGLSGPKGK
KGEPTLGTISGMKGDQGDPGSQGFPGVTGERGKDGIPGLPGLPGLPGDGGQGFPGEKGLP
GLPGEKGQPGLPGLPGIGLPGLPGPRGLPGDKGKDGSPGQQGTPGLKGDCCCRETVGKGD
LDTERGITLPCIIPRSYGPSGFPGTPGFPGPKGSRGLPGTRGPPGSHGNKGKPGSPGLVH
LPELPGFPGPRGEKGLPGFPGLPGKDGLPGIIGSPGLPGSKGATGDIFGAENGAPGEQGL
QGLPGDKGLIGDSGLPGLKGLHGKPGLLGPKGERGSPGTPGQVGEPGTPGSSGPYGIKGK
SGLPGAPGFQGTSGHPGNKGTRGEKGLPGSLVKKGLPGLKGLPGNPGLIGQKGSPGSPGI
SGLPALPGLKGEKGSVGSLGFPGMPGFPGIPGARGLKGIPGSTGKIGQSGHPGTPGEKGD
RGNPGPVGIPSPRHPMSNLWLKGDKGSQGSAGSDGFPGPRGDKGEAGRPGPPGLPGAPGL
PGTIKGVSGKPGPPGFMGIQGLPGLKGSSGITGFPGMPGESGSQGIRGSPGLPGASGLPG
LKGDNGRTLEISGSPGLKGQPGESGFKGAKGRDGLIGNMGFPGNKGKDGKVGVPGDVGLP
GAPGFPGTTGIRGEPGLPGSSGHQGAIGPPGLPGLIGPKGFPGFPGLHGLNGLPGTKGTH
GTPGPSITGVPGPAGIPGPKGEKGNPGIGIGAPGKPGQRGQKGDRGFPGLQGPAGLPGAP
GISLPSLIAGQPGDPGRPGLDGERGRLGPPGAPGPPGPSSNQGDTGDPGFPGIPGPQGPK
GDLGIPGFSGLPGELGLKGMRGEPGFMGTPGKVGPPGDPGFPGMKGKAGPRGSSGPQGAP
GQTPTTEAVQVPPGPLGLPGIDGIPGLIGDPGIQGPVGLKGFKGLSGVPGKDGPNGLPGP
PGALGDPGLPGLQGPPGFEGAPGQQGPFGMPGMPGQSVRVGYTLVKHSQSEQVPLCPIRM
SQLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLS
TTAPIPMMPVGQTQIAQYISRCSVCEAPSQAIAVHSQDITIPKCPLGWRSLWIGYSFLMH
TAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFGES
PMSETLKAGQLHTRVSRCQVCMKSL
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgcaccctgggttgtggctgctcctggttacgttgtgcttgaccgaggaactggcagga
gcgggagagaagtcttatggaaagccatgtgggggccaagactgcagtgggagctgtaag
tgctttcctgagaaaggagcgagagggcgacctggaccaattggaattcaaggtccaaca
ggtcctcaaggattcgctggccctactggtttatcgggattgaaaggagaaaggggttcc
ccaggccctctgggacctgatggaccaaaaggagataagggtcccatgggagttcctggc
tttcttggcatcaatgggattccggggcaccctggtcagccaggccccagaggcacacct
ggtctggacggctataatggaactcaaggagctgttggatttccaggccctagtggctat
cctgggcttctcggaccacctgggcttcctggtcagaaaggatcaaaaggtgaccctgtc
cttgctccaggtagtttcaaaggaatgaagggggatcctgggctacctggacttgatgga
atcactggcccacaaggagcacccggatctcctggagctgtaggacccacaggaccacca
ggattacaaggtcttccagggcctcctggtcctcctggtcctgatgggaatatggggcta
ggttttcaaggagagaaaggagtcaagggggatgtaggcctccctggcccagcaggacct
ccaccatctactggagagctggaattcatgggattccccaaagggaagaaaggatccaag
ggtgaaccagggcctaagggttttccaggcataagtggccctccaggctttccgggcctt
ggaactactggagaaaagggagaaaagggaatccctggtttgccaggacctaggggtcca
atgggttcagaaggagtccaaggccctccagggaaacagggcaagaaggggtccccagga
tttcctgggcttaatggattccaaggaattgagggtgaaaagggtgacattggcctgcca
ggcccagatgttttcatcgatatagatggtgctgtgatctcaggtaatcctggagaccct
ggtgtacccggcctcccaggccttaaaggagatgaaggcatccagggcctgcgtggccct
tctggtgtccctggcttgccagcattatcaggtgtcccaggagccctagggcctcaggga
tttccaggactgaagggggaccaaggaaacccaggccgtaccacaatcggggcagctggc
ctccctggcagagatggtttgccaggcccaccaggtccaccaggcccacctagtccagaa
tttgagactgagaccctacacaacaaagaaccagggttccctggtctccgaggagaacaa
ggtccaaaaggaaacccaggcctcaaaggagtaaaaggagactcaggtttctgtgcttgt
gacagcggtgtccccagcaatggactacccggggaaccaggcccacctggtccacaaggt
ctcataggccttccaggccttaaaggagccagaggagatcgaggttctggaggtgcacag
ggcccagcagggtctccaggctttcacgggcgtccaggtctttcaggacccaaaggaaag
aagggcgaaccaactctcggtacaatctcaggaatgaaaggggatcagggtgatcctggc
tcccagggttttcctggtgtgacaggagaacgaggaaaggatggaataccaggtttacca
ggtctgccaggtcttccgggtgatggtggacagggctttccaggtgaaaagggattacca
ggacttcctggtgaaaaaggccaacctggtctacctggcctcccaggaattgggttacca
ggacttcctggaccccgtgggcttcctggagataaaggcaaggatggatcaccaggacaa
caaggcacccctggattgaagggtgactgttgctgcagagagacggttggtaaaggagac
ttagacacagagagaggaatcaccttgccttgtattattccccggtcatacggtccatca
ggatttccaggcactcccggattcccaggccctaaagggtcccgtggcctccctgggacc
cgaggccctcctggatcacatggaaataaaggaaagccagggagtccaggactggttcat
cttcctgaactaccaggatttcctggacctcgtggggagaagggcttgcccgggtttcct
ggtctcccaggaaaagatggcttgcctgggataattggcagtccaggtttacctggttcc
aagggagccactggtgacatcttcggtgctgaaaatggtgctccaggggaacaaggccta
caaggattgccaggagacaaaggattgattggagactctggccttccaggactcaagggt
ttgcatgggaagcctggcttgctgggccccaaaggtgagcggggcagccctggaacacca
ggacaggtgggagagccaggcactccaggatctagtggcccatatggcatcaagggcaaa
tctggactcccaggagctccaggcttccaaggtacttcaggacaccctggaaacaaagga
actagaggagagaaaggtcttcccggatcacttgtaaagaaagggctgccagggctgaaa
ggccttcccgggaatccaggcctaataggacaaaaaggaagcccaggctctccagggatc
agtgggttgccagccctccctggactcaagggagagaaggggtctgttggatccttgggt
tttccaggaatgccaggttttcctggtattcccggagcaagaggtttaaaggggattccg
ggatcaacaggaaaaattggacaatctggacaccctggtactcctggtgaaaagggagac
agaggcaatccagggccagtcggaatacctagtccaagacatccaatgtcaaacctttgg
ttaaaaggagacaaaggctctcaaggctcagcaggatccgatggatttcctgggcctaga
ggtgacaaaggagaggctggtcgacctgggccaccaggcctgcctggagctcccggcctg
ccaggcactatcaaaggagttagtggaaagccagggccccctggcttcatgggaatccag
ggcttacctggcctgaaggggtcttccgggatcacaggtttcccaggaatgccaggagaa
agtggttcacaaggtatcagagggtcacctggactcccaggagcatctggtctcccgggc
ctgaaaggagacaatggccggacacttgaaatttccggtagcccaggacttaagggacaa
cctggtgaatctggttttaaaggtgcaaaaggaagagatggactaataggaaacatgggc
ttccctggaaacaaaggcaaagatggaaaagttggtgttcctggagatgttggccttcct
ggagctccaggatttccagggactacaggcatcagaggagaaccaggacttccaggttct
tctggtcatcaaggggcaattgggcctccgggactccctggattaataggacccaaaggc
ttccctggatttcctggtttacatggactgaatgggcttccaggcaccaagggtacccat
ggcactccaggacctagtatcaccggtgtgcctgggcctgctggtatccctggacccaaa
ggagaaaaaggaaatccaggaattggcatcggagctccagggaagccaggccagagaggg
caaaaaggtgatcgaggtttccccggtctccagggccctgctggtctccctggtgcccca
ggcatctccttgccctcactcatagcaggacagcctggtgaccctgggcgaccaggccta
gatggagaacgaggccgcctaggcccccctggggccccaggtccccctgggccatcctcg
aatcaaggtgacactggagaccctggcttccctggaattcctggacctcaggggcctaag
ggagacctaggaattccaggtttttctggcctccctggagagctaggactgaaaggcatg
agaggtgagcctggcttcatggggactccaggcaaggttgggccacctggagacccagga
tttcccgggatgaaggggaaggctgggccaagaggctcttccggcccccaaggtgctcct
ggacaaacaccaactacagaagctgtccaggttcctcccggacccttgggtctaccaggg
atagatggcatccctggcctcattggggaccctgggattcaaggccctgtaggcctaaaa
ggcttcaaaggtttatctggtgtccctggcaaagatggccccaatgggctcccaggccca
cctggggctcttggtgatcctggtctgcctggactgcaaggccctccaggatttgaagga
gctccagggcagcaaggccccttcgggatgcctggaatgcctggccagagcgtgagagtg
ggctacacgttggtaaagcacagccagtcggaacaggtgcccttgtgtcccatccggatg
agtcagctgtgggtggggtacagcttactgttcgtggagggacaagagaaagcccacaac
caggacctgggttttgctggctcctgtctgccccgcttcagcaccatgcccttcatctac
tgcaacatcaacgaggtgtgccactatgccaggcgcaatgataaatcctactggctctcc
actaccgcccctatccccatgatgcccgtcggccagacccagattgcccagtacatcagc
cgctgctctgtgtgtgaggcgccatcacaagccattgctgtgcacagccaggacatcacc
atcccaaagtgccccctgggctggcgcagcctctggatcggatactccttcctcatgcac
actgccgctggtgccgagggtggaggccagtccctggtctcacctggatcctgcctagag
gactttcgggccactcctttcatcgagtgcagtggtgcccgaggcacctgccactacttt
gcaaacaagtacagtttctggttgactacagtggaggagaggcagcagtttggagagtcg
cctatgtctgaaacgctgaaagctgggcagctccacacccgagtaagtcgctgccaggtg
tgtatgaaaagcctatag
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integrated database retrieval system
