Callithrix jacchus (white-tufted-ear marmoset): 100395051
Help
Entry
100395051 CDS
T03264
Symbol
TNR
Name
(RefSeq) tenascin-R isoform X1
KO
K06252
tenascin
Organism
cjc
Callithrix jacchus (white-tufted-ear marmoset)
Pathway
cjc04151
PI3K-Akt signaling pathway
cjc04510
Focal adhesion
cjc04512
ECM-receptor interaction
cjc05165
Human papillomavirus infection
cjc05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
cjc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100395051 (TNR)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100395051 (TNR)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100395051 (TNR)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
100395051 (TNR)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100395051 (TNR)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cjc00536
]
100395051 (TNR)
Glycosaminoglycan binding proteins [BR:
cjc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100395051 (TNR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Tenascin
Pur_ac_phosph_N
EGF_2
Uroplakin_II
Motif
Other DBs
NCBI-GeneID:
100395051
NCBI-ProteinID:
XP_002760383
Ensembl:
ENSCJAG00000008829
LinkDB
All DBs
Position
18:20960655..21401246
Genome browser
AA seq
1358 aa
AA seq
DB search
MAADGETVVLKNMLIGVNLILLGSMLKPSECQLEVTTERVQRQSMEDEGGIANYNTSSKE
QPVVFNHVYNIKVPLDSLCSSGLEASAEQEVSAEDETLAEYTGQTSDHESQVTFTHRINL
PKKVCPCASSAQVLQELLSRIEMLEREVSVLRDQCNANCCQESAATGQLDYIPHCSGHGN
FSFESCGCICNEGWFGKNCSEPYCPLGCSSRGVCVDGQCICDSEYSGDDCSELRCPTDCS
SRGLCVDGECVCEEPYTGEDCRELRCPGDCSGKGRCANGTCLCEEGYVGEDCSQRQCLNA
CSGRGHCEEGLCICEEGYQGPDCSAVAPPEDLRVAGISDRSIELEWDGPMAVTEYVISYQ
PTALGGLQLQQRVPGDWSGVTITELEPGLTYNISVYAVISNILSLPITAKVATHLSTPQG
LQFKTITETTVEVQWEPFSFSFDGWEISFIPKNNEGGVIAQVPSDVTSFNQTGLKPGEEY
IVNVVALKEQARSPPTSASVSTVIDGPTQILVRDVSDTVAFVEWIPPRAKVDFILLKYGL
VGGEGGRTTFRLQPPLSQYSVQALRPGSRYEVSVSAVRGTNESDSATTQFTTEIDAPKNL
RVGSRTATSLDLEWDNSEAEVQEYKLVYSTLAGEQYHEVLVPKGIGPTTRATLTDLVPGT
EYGVGISAIMNSQQSVPATMNARTELDSPRDLMVTASSETSISLIWTKAIGPIDHYRITF
TPSSGIASEVTVPKDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDAFTGFRPISHL
HFSHVTSSSVNITWSDPSPPADRLILNYSPRDEEEEMTEVSLDATKRHAVLMGLQPATEY
IVNLVAVHGTVTSEPIVGSITTGIDPPKDITISNVTKDSVMVSWSPPVASFDYYRVSYRP
TQVGRLDSSVVPNTVTEFTITRLYPATEYEISLNSVRGREESERICTLVHTAMDNPVDLI
ATNITPTEALLQWKAPMGEVENYVIVLTHFTVAGETILVDGVSEEFQLVDLLPSTHYTAT
MYATNGPLTSGTISTNFSTLLDPPANLTASEVTRQSALISWQPPRAEIENYVLTYKSTDG
SRKELIVDAEDTWIRLEGLLENTDYMVLLQAAQDTAWSSITSTTFTTGGRVFSHPQDCAQ
HLMNGDTLSGVYTIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVG
FGNLEDEFWLGLDNIHRITSQGRYELRVDMRDGQEAAFASYDRFSVEDSRNLYKLRIGSY
NGTAGDSLSYHQGRPFSTEDRDNDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQG
INWYHWKGHEFSIPFVEMKMRPYNHRLMAGRKRQSLQF
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagatggggaaacagtggttctgaagaacatgctcattggcgtcaacctgatc
cttctgggctccatgctcaagccttcggagtgtcagctggaggtcaccacagaaagggtg
cagagacagtcaatggaggacgagggaggcattgccaactataacacatccagcaaagag
cagcctgtggtcttcaaccacgtgtacaacattaaagtgcccctggacagcctctgctcc
tcagggctggaggcctctgctgagcaggaggtgagtgcagaagacgagactctggcagag
tacacgggccagacctcagaccacgagagccaggtcacctttacacacaggatcaacctc
cccaaaaaggtttgcccatgtgccagttcagcccaggtgctgcaggagctgctgagccgg
atcgagatgctggagagggaggtgtcggtgctgcgagaccagtgcaatgccaactgctgc
caagagagtgctgccacaggacaactggactatatccctcactgcagtggccacggcaac
tttagctttgagtcctgtggctgcatctgcaacgaaggctggtttggcaagaactgctcg
gagccctactgcccgctgggttgctccagccggggggtgtgtgtggatggccagtgcatc
tgtgacagcgagtacagcggggatgactgctctgaactgcggtgcccgacagactgcagc
tcccgggggctctgcgtggacggggaatgtgtctgtgaagagccctacactggcgaggac
tgcagggaactgaggtgccccggggactgttcggggaagggcagatgtgccaacggtacc
tgtttatgcgaggagggctacgttggtgaggactgcagccagcggcagtgtctgaatgcc
tgcagtgggcgaggacactgtgaggaggggctctgcatctgtgaagagggctaccagggc
cctgactgctcagcagttgcccctccagaggacttgcgagtggctggtatcagcgacagg
tccattgagctggaatgggacgggccgatggcagtgacggaatatgtgatctcttaccag
ccgacggccctggggggcctccagctccagcagcgggtgcctggagattggagtggtgtc
accatcacggagctggagccaggtctcacctacaacatcagcgtctacgctgtcattagc
aacatcctcagccttcccatcactgccaaggtggccacccatctctccactcctcaaggg
ctacaatttaagacaatcacagagaccaccgtggaggtgcagtgggagcccttctcattt
tccttcgatgggtgggaaatcagcttcattccaaagaacaatgaaggaggagtgattgct
caggtccccagtgatgttacatcctttaaccagacagggctgaagcctggggaggaatac
attgtcaatgtggtagctctgaaagaacaggcccggagcccccctacctcggccagcgtc
tccacagtcattgacggccccacgcagatcctggttcgagatgtctccgataccgtggct
tttgtggagtggatcccccctcgagccaaagtcgatttcattctcttgaaatacggcctg
gtgggcggggaaggcgggaggaccaccttccggctgcagcctcccctgagccagtactcg
gtgcaggccctgcggcctggctcccgctatgaggtgtcagtcagcgccgtccgcgggacc
aacgagagcgattctgccaccactcagttcacaacagagatcgatgcccctaagaacttg
cgggttggttctcgtacagcaaccagccttgacctcgagtgggataacagcgaggccgaa
gttcaggagtacaagcttgtgtacagcaccctggcgggtgagcagtatcacgaggtactg
gtccccaagggcattggtccaaccaccagggccaccctgacagatctggtacctggcact
gaatatggagttggaatatctgccatcatgaactcacagcaaagtgtgccagccaccatg
aatgccaggactgaacttgacagtccccgagacctcatggtgacagcctcctcggagacc
tccatctccctcatctggaccaaggccattggccccattgaccactaccgaattaccttt
accccatcctctgggatcgcctcagaagtcactgtacccaaggacaggacctcgtacaca
ctgacagatctagagcctggggcagagtacatcatttccatcactgctgagaggggtcgg
cagcagagcttggagtccactgtggatgctttcacaggcttccgtcccatatctcatctg
cacttttctcacgtgacctcctccagtgtgaacatcacttggagtgacccatctccccca
gcagacagactcattctgaactacagccccagggatgaggaggaagagatgacagaggtc
tccctggatgccaccaagaggcatgctgtcctgatgggcctgcaaccagccacagagtat
attgtgaaccttgtggctgtccatggcacagtgacatctgagcccattgtgggctccatc
accacaggaattgatccccccaaagatatcacaattagcaatgtgaccaaggactcagtg
atggtctcctggagccctcctgttgcatcttttgattactaccgagtatcatatcgaccc
acccaagtgggacgactagacagctcagtggtgcccaacactgtgacagaattcaccatc
accagactgtacccagctaccgaatacgaaatcagcctcaacagcgtgcggggcagggag
gaaagtgagcgcatctgcactctggtgcacacagccatggacaaccctgtggatctgatt
gctaccaacatcactccaacagaagccctgctgcagtggaaggcgccaatgggtgaagtg
gagaactacgtcattgtcctcacacacttcacagttgctggagagaccatcctggttgat
ggagtcagtgaggaattccagcttgttgacctgcttcctagtacccactataccgccacc
atgtatgccaccaatgggcctctcaccagtggcactatcagcaccaacttttctactctc
ctggaccctccggcaaacctgacagccagtgaagtcaccagacaaagtgccctgatctcc
tggcagcctcccagggcagagattgaaaattatgtcttgacttacaaatctactgatgga
agccgcaaggagctgattgtggatgcagaagacacctggattcgactggagggcctgttg
gagaacacagactacatggtgctcctgcaggcagcacaggacactgcgtggagcagcatc
acctccaccaccttcactacagggggccgggtgttttctcatcctcaagactgtgcccag
catttgatgaatggagacactctgagtggggtttacaccatcttcctcaatggggagctg
agccaaaagttacaagtgtactgcgatatgaccactgacgggggcggctggattgtattt
cagaggcggcagaatggccaaactgattttttccggaaatgggctgattaccgtgttggc
ttcgggaacctggaggatgagttctggctggggctggacaacatacacaggatcacatcc
cagggccgctatgagctgcgcgtggacatgcgggatggccaggaggccgcctttgcctcc
tatgacaggttctctgtcgaggacagcagaaacctgtacaaactccgcataggaagctac
aatggcaccgcaggggactccctcagttatcatcaaggacgccctttctccacagaggat
agagacaatgatgttgcagtgaccaactgtgccatgtcatacaagggagcgtggtggtat
aagaactgccaccggaccaacctcaatgggaagtacggggagtccaggcacagtcagggc
atcaactggtaccattggaaaggccacgagttctccatcccctttgtggaaatgaagatg
cgcccctacaaccaccgtctcatggcagggaggaaacggcagtccttacagttctga
DBGET
integrated database retrieval system
